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Aliases for MIR5197 Gene

Subcategory (RNA class) for MIR5197 Gene


Quality Score for this RNA gene is


Aliases for MIR5197 Gene

  • MicroRNA 5197 2 3 5
  • Hsa-Mir-5197 3

External Ids for MIR5197 Gene

Previous GeneCards Identifiers for MIR5197 Gene

  • GC05U901590
  • GC05P143062

Summaries for MIR5197 Gene

Entrez Gene Summary for MIR5197 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5197 Gene

MIR5197 (MicroRNA 5197) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5197 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5197 Gene

Genomics for MIR5197 Gene

Regulatory Elements for MIR5197 Gene

Enhancers for MIR5197 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H143680 0.9 ENCODE 0.7 +2.5 2527 3.1 FOXA2 BMI1 RAD21 THRB RARA SMARCC2 FOS CREM MIXL1 THAP11 NR3C1 MIR5197 LOC100420513
GH05H143693 1.4 FANTOM5 Ensembl ENCODE 0.4 +14.4 14358 1.8 HDGF PKNOX1 FOXA2 TBL1XR1 MLX ARID4B BMI1 BATF RAD21 RARA KCTD16 MIR5197 LOC100420513
GH05H143674 0.8 ENCODE 0.4 -5.7 -5710 0.2 ELF3 FOXA2 MLX RAD21 RARA CREM MIXL1 HMG20B TGIF2 NFIL3 MIR5197 GC05M143652
GH05H143717 0.7 Ensembl ENCODE 0.3 +37.8 37839 0.2 JUND POLR2A MAFK MIR5197 LOC100420513
GH05H143698 0.5 FANTOM5 0.4 +18.8 18840 0.2 NFE2 EP300 RFX5 MIR5197 LOC100420513
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5197 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5197 Gene

Genomic Locations for MIR5197 Gene
112 bases
Plus strand

Genomic View for MIR5197 Gene

Genes around MIR5197 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5197 Gene

Proteins for MIR5197 Gene

Post-translational modifications for MIR5197 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5197 Gene

Domains & Families for MIR5197 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5197 Gene

Function for MIR5197 Gene

Phenotypes From GWAS Catalog for MIR5197 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5197 Gene

Localization for MIR5197 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5197 Gene

Pathways & Interactions for MIR5197 Gene

SuperPathways for MIR5197 Gene

No Data Available

Interacting Proteins for MIR5197 Gene

Gene Ontology (GO) - Biological Process for MIR5197 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5197 Gene

Drugs & Compounds for MIR5197 Gene

No Compound Related Data Available

Transcripts for MIR5197 Gene

mRNA/cDNA for MIR5197 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5197 Gene

No ASD Table

Relevant External Links for MIR5197 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5197 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5197 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5197 Gene:

genes like me logo Genes that share expression patterns with MIR5197: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5197 Gene

Orthologs for MIR5197 Gene

Evolution for MIR5197 Gene

Gene Tree for MIR5197 (if available)
Gene Tree for MIR5197 (if available)

No data available for Orthologs for MIR5197 Gene

Paralogs for MIR5197 Gene

No data available for Paralogs for MIR5197 Gene

Variants for MIR5197 Gene

Sequence variations from dbSNP and Humsavar for MIR5197 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1003437576 -- 143,678,747(+) CATAC(A/C)CTACA upstream-variant-2KB
rs10051292 -- 143,678,512(+) TCCCA(A/C/T)CTTTA upstream-variant-2KB
rs10051301 -- 143,678,548(+) TTTTC(A/C)TACTT upstream-variant-2KB
rs1005440851 -- 143,677,885(+) ATCCA(A/G)TTTGA upstream-variant-2KB
rs1005480234 -- 143,678,726(+) TGAGT(A/C)ACTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5197 Gene

Variant ID Type Subtype PubMed ID
nsv830512 CNV gain 17160897

Relevant External Links for MIR5197 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5197 Gene

Disorders for MIR5197 Gene

Relevant External Links for MIR5197

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5197 Gene

Publications for MIR5197 Gene

  1. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D … den Boer ML (Leukemia 2011) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR5197 Gene

Sources for MIR5197 Gene

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