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Aliases for OR2AG1 Gene

Aliases for OR2AG1 Gene

  • Olfactory Receptor Family 2 Subfamily AG Member 1 (Gene/Pseudogene) 2 3 5
  • Olfactory Receptor OR11-79 3 4
  • Olfactory Receptor 2AG3 3 4
  • OR2AG3 3 4
  • Olfactory Receptor, Family 2, Subfamily AG, Member 1 (Gene/Pseudogene) 2
  • Olfactory Receptor, Family 2, Subfamily AG, Member 1 3
  • Olfactory Receptor, Family 2, Subfamily AG, Member 3 3
  • Olfactory Receptor 2AG1 3
  • HT3 Olfactory Receptor 3
  • OR11-79 3
  • HT3 4

External Ids for OR2AG1 Gene

Previous HGNC Symbols for OR2AG1 Gene

  • OR2AG3

Previous GeneCards Identifiers for OR2AG1 Gene

  • GC11U990571
  • GC11P006771
  • GC11P006762
  • GC11P006806

Summaries for OR2AG1 Gene

Entrez Gene Summary for OR2AG1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. This olfactory receptor gene is a segregating pseudogene, where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele encoding a protein that is predicted to be non-functional. [provided by RefSeq, Jul 2015]

GeneCards Summary for OR2AG1 Gene

OR2AG1 (Olfactory Receptor Family 2 Subfamily AG Member 1 (Gene/Pseudogene)) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2AG2.

UniProtKB/Swiss-Prot for OR2AG1 Gene

  • Odorant receptor.

Gene Wiki entry for OR2AG1 Gene

Additional gene information for OR2AG1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2AG1 Gene

Genomics for OR2AG1 Gene

GeneHancer (GH) Regulatory Elements for OR2AG1 Gene

Promoters and enhancers for OR2AG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I006742 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 7.9 -37.8 -37788 6.5 PKNOX1 SMAD1 YBX1 TCF12 ZNF766 ZNF207 RUNX3 JUNB ZNF592 SMARCA4 GVINP1 OR2AG2 ILK RRP8 ENSG00000254641 TAF10 OR10A4 APBB1 SMPD1 OR2AG1
GH11I006812 Enhancer 0.6 ENCODE 10.7 +29.6 29565 0.2 MEIS2 CTCF PKNOX1 ZNF654 L3MBTL2 MAX TRIM22 SIN3A REST RAD21 OR2AG1 OR6A2 GC11P006840 OR2AG2
GH11I006468 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.2 -313.6 -313649 1.5 HDGF PKNOX1 ZNF335 POLR2B GLIS2 POLR2A ZBTB48 PATZ1 ATF7 CREM OR56A1 OR10A4 OR2AG2 OR10A2 OR56A4 OR52W1 OR2AG1 OR56B4 OR10A5 OR6A2
GH11I006719 Enhancer 0.6 ENCODE dbSUPER 9.7 -63.3 -63273 0.6 MITF MNT PIR51504 RPL21P94 MRPL17 DCHS1 ENSG00000255390 TPP1 OR2AG2 OR2AG1 GC11P006733 GVINP1
GH11I006817 Enhancer 0.4 ENCODE 10.5 +34.8 34825 0.1 CTCF POLR2A SIN3A OR2AG1 OR6A2 GC11P006840 OR2AG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR2AG1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR2AG1 gene promoter:

Genomic Locations for OR2AG1 Gene

Genomic Locations for OR2AG1 Gene
chr11:6,783,020-6,791,558
(GRCh38/hg38)
Size:
8,539 bases
Orientation:
Plus strand
chr11:6,806,248-6,807,245
(GRCh37/hg19)

Genomic View for OR2AG1 Gene

Genes around OR2AG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2AG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2AG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2AG1 Gene

Proteins for OR2AG1 Gene

  • Protein details for OR2AG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H205-O2AG1_HUMAN
    Recommended name:
    Olfactory receptor 2AG1
    Protein Accession:
    Q9H205
    Secondary Accessions:
    • B9EKV7
    • Q6IFG7
    • Q96R26

    Protein attributes for OR2AG1 Gene

    Size:
    316 amino acids
    Molecular mass:
    35270 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR2AG1 Gene

Post-translational modifications for OR2AG1 Gene

Other Protein References for OR2AG1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2AG1 Gene

Domains & Families for OR2AG1 Gene

Gene Families for OR2AG1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins
  • Transporters

Protein Domains for OR2AG1 Gene

Suggested Antigen Peptide Sequences for OR2AG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H205

UniProtKB/Swiss-Prot:

O2AG1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2AG1: view

Function for OR2AG1 Gene

Molecular function for OR2AG1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR2AG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005515 protein binding IPI 19909339
genes like me logo Genes that share ontologies with OR2AG1: view
genes like me logo Genes that share phenotypes with OR2AG1: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2AG1 Gene

Localization for OR2AG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2AG1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR2AG1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2AG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR2AG1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR2AG1 Gene

Pathways & Interactions for OR2AG1 Gene

genes like me logo Genes that share pathways with OR2AG1: view

Pathways by source for OR2AG1 Gene

1 BioSystems pathway for OR2AG1 Gene
1 KEGG pathway for OR2AG1 Gene

Gene Ontology (GO) - Biological Process for OR2AG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007608 sensory perception of smell IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2AG1: view

No data available for SIGNOR curated interactions for OR2AG1 Gene

Drugs & Compounds for OR2AG1 Gene

No Compound Related Data Available

Transcripts for OR2AG1 Gene

mRNA/cDNA for OR2AG1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR2AG1 Gene

No ASD Table

Relevant External Links for OR2AG1 Gene

GeneLoc Exon Structure for
OR2AG1
ECgene alternative splicing isoforms for
OR2AG1

Expression for OR2AG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR2AG1 Gene

Protein differential expression in normal tissues from HIPED for OR2AG1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR2AG1 Gene



Protein tissue co-expression partners for OR2AG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR2AG1 Gene:

OR2AG1

SOURCE GeneReport for Unigene cluster for OR2AG1 Gene:

Hs.553608
genes like me logo Genes that share expression patterns with OR2AG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2AG1 Gene

Orthologs for OR2AG1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR2AG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466417 33
  • 98.73 (n)
cow
(Bos Taurus)
Mammalia LOC100125776 33
  • 86.09 (n)
mouse
(Mus musculus)
Mammalia Or2ag1 51 Olfr705 33 16
  • 83.12 (n)
Or2ag12 51 Olfr693
  • chr7:106,677,537-106,678,484
Or2ag13 51 Olfr695
  • chr7:106,713,735-106,714,679
Or2ag16 51 Olfr698
  • chr7:106,752,454-106,753,386
Or2ag17 51 Olfr699
  • chr7:106,790,052-106,790,999
Or2ag18 51 Olfr700
  • chr7:106,805,513-106,806,460
Or2ag1b 51 Olfr694
  • chr7:106,688,788-106,689,729
Or2ag20 51 Olfr704
  • chr7:106,864,982-106,865,926
rat
(Rattus norvegicus)
Mammalia Olr217 33
  • 82.59 (n)
Species where no ortholog for OR2AG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR2AG1 Gene

ENSEMBL:
Gene Tree for OR2AG1 (if available)
TreeFam:
Gene Tree for OR2AG1 (if available)

Paralogs for OR2AG1 Gene

(445) SIMAP similar genes for OR2AG1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR2AG1 Gene

genes like me logo Genes that share paralogs with OR2AG1: view

Variants for OR2AG1 Gene

Sequence variations from dbSNP and Humsavar for OR2AG1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000796345 -- 6,783,656(+) A/C upstream_transcript_variant
rs1000977663 -- 6,783,923(+) G/A upstream_transcript_variant
rs1002338365 -- 6,783,067(+) C/G upstream_transcript_variant
rs1002600974 -- 6,783,197(+) A/G upstream_transcript_variant
rs1002792872 -- 6,786,213(+) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR2AG1 Gene

Variant ID Type Subtype PubMed ID
dgv1055n100 CNV loss 25217958
dgv1056n100 CNV loss 25217958
dgv1625n54 CNV loss 21841781
dgv1626n54 CNV loss 21841781
esv3579329 CNV loss 25503493
nsv1035138 CNV gain 25217958
nsv1043006 CNV loss 25217958
nsv1046129 CNV loss 25217958
nsv467701 CNV loss 19166990
nsv832060 CNV gain 17160897
nsv982979 CNV duplication 23825009

Variation tolerance for OR2AG1 Gene

Residual Variation Intolerance Score: 88.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.03; 75.04% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR2AG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2AG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR2AG1 Gene

Disorders for OR2AG1 Gene

Additional Disease Information for OR2AG1

No disorders were found for OR2AG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2AG1 Gene

Publications for OR2AG1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 58
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 58
  3. Genomic analysis of orthologous mouse and human olfactory receptor loci. (PMID: 11416212) Lane RP … Trask BJ (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 4 58
  4. Personal receptor repertoires: olfaction as a model. (PMID: 22908908) Olender T … Lancet D (BMC genomics 2012) 3 58
  5. Olfactory receptor signaling is regulated by the post-synaptic density 95, Drosophila discs large, zona-occludens 1 (PDZ) scaffold multi-PDZ domain protein 1. (PMID: 19909339) Dooley R … Neuhaus EM (The FEBS journal 2009) 3 58

Products for OR2AG1 Gene

Sources for OR2AG1 Gene

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