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Aliases for STRADA Gene

Aliases for STRADA Gene

  • STE20-Related Kinase Adaptor Alpha 2 3 5
  • Serologically Defined Breast Cancer Antigen NY-BR-96 3 4
  • STE20-Like Pseudokinase 2 3
  • STRAD Alpha 3 4
  • STRAD 3 4
  • LYK5 3 4
  • STE20-Related Kinase Adapter Protein Alpha 3
  • STE20-Related Adapter Protein 4
  • Protein Kinase LYK5 3
  • NY-BR-96 3
  • PMSE 3
  • Stlk 3

External Ids for STRADA Gene

Previous GeneCards Identifiers for STRADA Gene

  • GC17M059134
  • GC17M061780
  • GC17M057148
  • GC17M063703

Summaries for STRADA Gene

Entrez Gene Summary for STRADA Gene

  • The protein encoded by this gene contains a STE20-like kinase domain, but lacks several residues that are critical for catalytic activity, so it is termed a 'pseudokinase'. The protein forms a heterotrimeric complex with serine/threonine kinase 11 (STK11, also known as LKB1) and the scaffolding protein calcium binding protein 39 (CAB39, also known as MO25). The protein activates STK11 leading to the phosphorylation of both proteins and excluding STK11 from the nucleus. The protein is necessary for STK11-induced G1 cell cycle arrest. A mutation in this gene has been shown to result in polyhydramnios, megalencephaly, and symptomatic epilepsy (PMSE) syndrome. Multiple transcript variants encoding different isoforms have been found for this gene. Additional transcript variants have been described but their full-length nature is not known. [provided by RefSeq, Sep 2009]

GeneCards Summary for STRADA Gene

STRADA (STE20-Related Kinase Adaptor Alpha) is a Protein Coding gene. Diseases associated with STRADA include Polyhydramnios, Megalencephaly, And Symptomatic Epilepsy and Benign Epilepsy With Centrotemporal Spikes. Among its related pathways are LKB1 signaling events and AMP-activated Protein Kinase (AMPK) Signaling. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is STRADB.

UniProtKB/Swiss-Prot for STRADA Gene

  • Pseudokinase which, in complex with CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta), binds to and activates STK11/LKB1. Adopts a closed conformation typical of active protein kinases and binds STK11/LKB1 as a pseudosubstrate, promoting conformational change of STK11/LKB1 in an active conformation.

Gene Wiki entry for STRADA Gene

Additional gene information for STRADA Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STRADA Gene

Genomics for STRADA Gene

GeneHancer (GH) Regulatory Elements for STRADA Gene

Promoters and enhancers for STRADA Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J063694 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 672.8 +42.7 42715 10.2 HDGF PKNOX1 ARID4B SIN3A ZBTB7B IRF4 ZNF48 GLIS2 E2F8 ZNF207 STRADA LIMD2 GC17M063698 GC17M063699 LOC729683 PIR54058 FTSJ3 CSH2 ENSG00000125695 PSMC5
GH17J063740 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.0 27 3.5 CLOCK DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC ZNF610 ZNF585B STRADA FTSJ3 DDX5 SMARCD2 CSH2 POLG2 CEP95 DDX42 ENSG00000259333 ENSG00000263501
GH17J064500 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 10.4 -762.8 -762786 7.7 CLOCK FEZF1 DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 POLG2 CEP95 DDX5 FTSJ3 DDX42 SLC16A6P1 PLEKHM1P1 ENSG00000265982 SMARCD2 MAP3K3
GH17J063600 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.5 +140.7 140710 2.5 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 TACO1 FTSJ3 POLG2 DDX42 CEP95 DDX5 SMARCD2 DCAF7 MAP3K3 CSH2
GH17J064495 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 -755.6 -755560 3.5 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A DMAP1 POLG2 FTSJ3 SMARCD2 PLEKHM1P1 ENSG00000265982 DDX5 SLC16A6P1 CEP95 DDX42 MILR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around STRADA on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the STRADA gene promoter:
  • AREB6
  • AML1a
  • ZID
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)

Genomic Locations for STRADA Gene

Genomic Locations for STRADA Gene
chr17:63,682,336-63,741,986
(GRCh38/hg38)
Size:
59,651 bases
Orientation:
Minus strand
chr17:61,780,192-61,819,330
(GRCh37/hg19)
Size:
39,139 bases
Orientation:
Minus strand

Genomic View for STRADA Gene

Genes around STRADA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STRADA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STRADA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STRADA Gene

Proteins for STRADA Gene

  • Protein details for STRADA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTN6-STRAA_HUMAN
    Recommended name:
    STE20-related kinase adapter protein alpha
    Protein Accession:
    Q7RTN6
    Secondary Accessions:
    • B4DDE3
    • B4DW17
    • J3KTC9
    • Q5JPI2
    • Q7Z4K9
    • Q8NC31
    • Q8NCF1
    • Q9H272

    Protein attributes for STRADA Gene

    Size:
    431 amino acids
    Molecular mass:
    48369 Da
    Quaternary structure:
    • Component of a trimeric complex composed of STK11/LKB1, STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): the complex tethers STK11/LKB1 in the cytoplasm and stimulates its catalytic activity.

    Three dimensional structures from OCA and Proteopedia for STRADA Gene

    Alternative splice isoforms for STRADA Gene

neXtProt entry for STRADA Gene

Post-translational modifications for STRADA Gene

  • Ubiquitination at posLast=239239
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for STRADA Gene

Domains & Families for STRADA Gene

Gene Families for STRADA Gene

IUPHAR :
Human Protein Atlas (HPA):
  • Disease related genes
  • Enzymes
  • Potential drug targets
  • Predicted intracellular proteins

Protein Domains for STRADA Gene

Graphical View of Domain Structure for InterPro Entry

Q7RTN6

UniProtKB/Swiss-Prot:

STRAA_HUMAN :
  • The protein kinase domain is predicted to be catalytically inactive.
  • Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
Domain:
  • The protein kinase domain is predicted to be catalytically inactive.
Family:
  • Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
genes like me logo Genes that share domains with STRADA: view

Function for STRADA Gene

Molecular function for STRADA Gene

UniProtKB/Swiss-Prot Function:
Pseudokinase which, in complex with CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta), binds to and activates STK11/LKB1. Adopts a closed conformation typical of active protein kinases and binds STK11/LKB1 as a pseudosubstrate, promoting conformational change of STK11/LKB1 in an active conformation.

Phenotypes From GWAS Catalog for STRADA Gene

Gene Ontology (GO) - Molecular Function for STRADA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 NOT protein kinase activity IDA,IEA 12805220
GO:0004674 NOT protein serine/threonine kinase activity IBA --
GO:0005515 protein binding IPI 12805220
GO:0005524 ATP binding IEA --
GO:0019900 kinase binding IPI 19892943
genes like me logo Genes that share ontologies with STRADA: view
genes like me logo Genes that share phenotypes with STRADA: view

Human Phenotype Ontology for STRADA Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for STRADA

CRISPR Products

miRNA for STRADA Gene

miRTarBase miRNAs that target STRADA

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for STRADA

Clone Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for STRADA Gene

Localization for STRADA Gene

Subcellular locations from UniProtKB/Swiss-Prot for STRADA Gene

Nucleus. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STRADA gene
Compartment Confidence
nucleus 5
cytosol 4

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Nucleoplasm (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for STRADA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 12805220
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA,IDA 12805220
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with STRADA: view

Pathways & Interactions for STRADA Gene

genes like me logo Genes that share pathways with STRADA: view

Pathways by source for STRADA Gene

Gene Ontology (GO) - Biological Process for STRADA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 NOT protein phosphorylation IDA,IEA 12805220
GO:0006611 protein export from nucleus IDA 12805220
GO:0007049 cell cycle IEA --
GO:0007050 cell cycle arrest TAS --
GO:0007346 regulation of mitotic cell cycle IBA --
genes like me logo Genes that share ontologies with STRADA: view

No data available for SIGNOR curated interactions for STRADA Gene

Drugs & Compounds for STRADA Gene

No Compound Related Data Available

Transcripts for STRADA Gene

mRNA/cDNA for STRADA Gene

(17) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(54) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for STRADA Gene

STE20-related kinase adaptor alpha:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for STRADA

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for STRADA Gene

No ASD Table

Relevant External Links for STRADA Gene

GeneLoc Exon Structure for
STRADA
ECgene alternative splicing isoforms for
STRADA

Expression for STRADA Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STRADA Gene

Protein differential expression in normal tissues from HIPED for STRADA Gene

This gene is overexpressed in Plasma (17.2), Testis (17.2), and Ovary (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for STRADA Gene



Protein tissue co-expression partners for STRADA Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of STRADA Gene:

STRADA

SOURCE GeneReport for Unigene cluster for STRADA Gene:

Hs.514402

Evidence on tissue expression from TISSUES for STRADA Gene

  • Lymph node(4)

Phenotype-based relationships between genes and organs from Gene ORGANizer for STRADA Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • digestive
  • integumentary
  • nervous
  • reproductive
  • skeletal muscle
  • skeleton
Regions:
Head and neck:
  • brain
  • cheek
  • chin
  • eye
  • face
  • forehead
  • head
  • jaw
  • lip
  • mandible
  • maxilla
  • mouth
  • nose
  • skull
Pelvis:
  • placenta
  • uterus
General:
  • skin
genes like me logo Genes that share expression patterns with STRADA: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for STRADA Gene

Orthologs for STRADA Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for STRADA Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STRADA 34 33
  • 96.2 (n)
OneToOne
dog
(Canis familiaris)
Mammalia STRADA 34 33
  • 92.81 (n)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia STRADA 34
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia STRADA 34 33
  • 89.1 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Strada 16 34 33
  • 88.71 (n)
rat
(Rattus norvegicus)
Mammalia Strada 33
  • 88.17 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia STRADA 34
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves STRADA 34 33
  • 76.07 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia STRADA 34
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia strada 33
  • 72.46 (n)
zebrafish
(Danio rerio)
Actinopterygii strada 34 33
  • 69.88 (n)
OneToOne
wufj99g05 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007805 33
  • 51.83 (n)
fruit fly
(Drosophila melanogaster)
Insecta Stlk 34 33
  • 42.89 (n)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea strd-1 34 33
  • 44.75 (n)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SKM1 34
  • 13 (a)
ManyToMany
CLA4 34
  • 10 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 45 (a)
OneToMany
Species where no ortholog for STRADA was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for STRADA Gene

ENSEMBL:
Gene Tree for STRADA (if available)
TreeFam:
Gene Tree for STRADA (if available)
Aminode:
Evolutionary constrained regions (ECRs) for STRADA: view image

Paralogs for STRADA Gene

Paralogs for STRADA Gene

(14) SIMAP similar genes for STRADA Gene using alignment to 11 proteins:

  • STRAA_HUMAN
  • J3KSA2_HUMAN
  • J3KSK5_HUMAN
  • J3QKR7_HUMAN
  • J3QKU4_HUMAN
  • J3QQS3_HUMAN
  • J3QR78_HUMAN
  • J3QRC1_HUMAN
  • J3QRH3_HUMAN
  • J3QS66_HUMAN
  • Q86YC8_HUMAN

Pseudogenes.org Pseudogenes for STRADA Gene

genes like me logo Genes that share paralogs with STRADA: view

Variants for STRADA Gene

Sequence variations from dbSNP and Humsavar for STRADA Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1045863605 uncertain-significance, Polyhydramnios, megalencephaly, and symptomatic epilepsy 63,710,817(-) T/C coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs1057519011 uncertain-significance, Polyhydramnios, Seizure Disorders, intellectual deficiency 63,706,701(-) A/G/T coding_sequence_variant, missense_variant, non_coding_transcript_variant, synonymous_variant
rs201773578 uncertain-significance, Polyhydramnios, megalencephaly, and symptomatic epilepsy 63,707,264(-) G/A coding_sequence_variant, intron_variant, missense_variant
rs369276577 likely-benign, Polyhydramnios, megalencephaly, and symptomatic epilepsy 63,707,424(-) G/A intron_variant
rs372229032 uncertain-significance, Polyhydramnios, megalencephaly, and symptomatic epilepsy 63,704,519(-) C/T 3_prime_UTR_variant, coding_sequence_variant, missense_variant, non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for STRADA Gene

Variant ID Type Subtype PubMed ID
nsv575854 CNV loss 21841781

Variation tolerance for STRADA Gene

Residual Variation Intolerance Score: 47.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.29; 25.64% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for STRADA Gene

Human Gene Mutation Database (HGMD)
STRADA
SNPedia medical, phenotypic, and genealogical associations of SNPs for
STRADA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STRADA Gene

Disorders for STRADA Gene

MalaCards: The human disease database

(7) MalaCards diseases for STRADA Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

STRAA_HUMAN
  • Note=A homozygous 7-kb deletion involving STRADA is a cause of a syndrome characterized by polyhydramnios, megalencephaly and symptomatic epilepsy.

Additional Disease Information for STRADA

genes like me logo Genes that share disorders with STRADA: view

No data available for Genatlas for STRADA Gene

Publications for STRADA Gene

  1. Activation of the tumour suppressor kinase LKB1 by the STE20-like pseudokinase STRAD. (PMID: 12805220) Baas AF … Clevers HC (The EMBO journal 2003) 2 3 4 22 58
  2. Structure of the LKB1-STRAD-MO25 complex reveals an allosteric mechanism of kinase activation. (PMID: 19892943) Zeqiraj E … van Aalten DM (Science (New York, N.Y.) 2009) 3 4 58
  3. Novel splice isoforms of STRADalpha differentially affect LKB1 activity, complex assembly and subcellular localization. (PMID: 17921699) Marignani PA … Resta N (Cancer biology & therapy 2007) 2 3 58
  4. Polyhydramnios, megalencephaly and symptomatic epilepsy caused by a homozygous 7-kilobase deletion in LYK5. (PMID: 17522105) Puffenberger EG … Morton DH (Brain : a journal of neurology 2007) 4 22 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58

Products for STRADA Gene

Sources for STRADA Gene