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Aliases for FCRLA Gene

Aliases for FCRLA Gene

  • Fc Receptor Like A 2 3 5
  • Fc Receptor-Like And Mucin-Like Protein 1 3 4
  • Fc Receptor Homolog Expressed In B-Cells 3 4
  • Fc Receptor-Like And Mucin-Like 1 2 3
  • Fc Receptor-Related Protein X 3 4
  • Fc Receptor-Like Protein 3 4
  • Fc Receptor-Like A 2 3
  • FCRLM1 3 4
  • FCRL1 3 4
  • FCRL 3 4
  • FCRX 3 4
  • FREB 3 4
  • Fc Receptor Homolog Expressed In B Cells (FREB) 3
  • Fc Receptor Related Protein X 3
  • FCRLc1 3
  • FCRLc2 3
  • FCRLX 3
  • FCRLb 3
  • FCRLd 3
  • FCRLe 3
  • FcRX 4

External Ids for FCRLA Gene

Previous HGNC Symbols for FCRLA Gene

  • FCRLM1

Previous GeneCards Identifiers for FCRLA Gene

  • GC01P159944
  • GC01P161676
  • GC01P132921

Summaries for FCRLA Gene

Entrez Gene Summary for FCRLA Gene

  • This gene encodes a protein similar to receptors for the Fc fragment of gamma immunoglobulin (IgG). These receptors, referred to as FCGRs, mediate the destruction of IgG-coated antigens and of cells induced by antibodies. This encoded protein is selectively expressed in B cells, and may be involved in their development. This protein may also be involved in the development of lymphomas. Multiple alternatively spliced transcript variants that encode different protein isoforms have been described for this gene. [provided by RefSeq, Aug 2011]

GeneCards Summary for FCRLA Gene

FCRLA (Fc Receptor Like A) is a Protein Coding gene. An important paralog of this gene is FCRL6.

UniProtKB/Swiss-Prot for FCRLA Gene

  • May be implicated in B-cell differentiation and lymphomagenesis.

Gene Wiki entry for FCRLA Gene

Additional gene information for FCRLA Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCRLA Gene

Genomics for FCRLA Gene

GeneHancer (GH) Regulatory Elements for FCRLA Gene

Promoters and enhancers for FCRLA Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J161705 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 667.5 +0.2 173 3.2 PKNOX1 ATF1 ARNT IRF4 TCF12 ZNF766 FOS ATF7 RUNX3 JUNB FCRLA USP21 DUSP12 PPOX FCRLB LOC148430 FCGR2B HSPA7 GC01M161708
GH01J161725 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 21 +20.4 20411 3.5 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 FCRLB USP21 DUSP12 PPOX FCRLA B4GALT3 ATF6 DEDD LOC148430 FCGR2B
GH01J161738 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16 +33.2 33170 3.5 PKNOX1 ATF1 ARNT SIN3A YBX1 ZNF2 IRF4 YY1 TCF12 ZNF213 FCRLA FCGR2A DUSP12 ATF6 HSPA6 FCGR3A RN7SL466P
GH01J161528 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -175.8 -175812 4.7 PKNOX1 ARNT SIN3A FEZF1 ZNF2 IRF4 YY1 ZNF213 ZNF207 ZNF143 TRG-TCC2-6 TRL-CAG1-6 USP21 DUSP12 PPOX FCGR2C DEDD FCGR2A B4GALT3 FCRLA
GH01J161729 Enhancer 1.2 Ensembl ENCODE dbSUPER 16.6 +23.4 23378 1.7 LEF1 JUN BATF FOSL1 ZFHX2 EED ZSCAN29 FOS ETV6 IKZF2 FCRLA FCRLB DUSP12 RN7SL466P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around FCRLA on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FCRLA gene promoter:
  • STAT5B
  • FOXL1
  • POU3F1
  • LCR-F1
  • MyoD
  • E47
  • Tal-1
  • YY1
  • Roaz
  • STAT1

Genomic Locations for FCRLA Gene

Genomic Locations for FCRLA Gene
7,381 bases
Plus strand
7,381 bases
Plus strand

Genomic View for FCRLA Gene

Genes around FCRLA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCRLA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCRLA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCRLA Gene

Proteins for FCRLA Gene

neXtProt entry for FCRLA Gene

Post-translational modifications for FCRLA Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Abcam antibodies for FCRLA

No data available for DME Specific Peptides for FCRLA Gene

Domains & Families for FCRLA Gene

Gene Families for FCRLA Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for FCRLA Gene

Suggested Antigen Peptide Sequences for FCRLA Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FCRLA: view

No data available for UniProtKB/Swiss-Prot for FCRLA Gene

Function for FCRLA Gene

Molecular function for FCRLA Gene

UniProtKB/Swiss-Prot Function:
May be implicated in B-cell differentiation and lymphomagenesis.

Phenotypes From GWAS Catalog for FCRLA Gene

genes like me logo Genes that share phenotypes with FCRLA: view

Animal Models for FCRLA Gene

MGI Knock Outs for FCRLA:
  • Fcrla Fcrla<tm1b(KOMP)Wtsi>
  • Fcrla Fcrla<tm1.1Cln>

Animal Model Products

CRISPR Products

miRNA for FCRLA Gene

miRTarBase miRNAs that target FCRLA

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FCRLA

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FCRLA Gene

Localization for FCRLA Gene

Subcellular locations from UniProtKB/Swiss-Prot for FCRLA Gene

Cytoplasm. Note=Seems not to be secreted. {ECO:0000269 PubMed:11891275}.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FCRLA gene
Compartment Confidence
plasma membrane 4
extracellular 2
lysosome 1

Gene Ontology (GO) - Cellular Components for FCRLA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 15815692
genes like me logo Genes that share ontologies with FCRLA: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for FCRLA Gene

Pathways & Interactions for FCRLA Gene

SuperPathways for FCRLA Gene

No Data Available

Interacting Proteins for FCRLA Gene

Gene Ontology (GO) - Biological Process for FCRLA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with FCRLA: view

No data available for Pathways by source and SIGNOR curated interactions for FCRLA Gene

Drugs & Compounds for FCRLA Gene

No Compound Related Data Available

Transcripts for FCRLA Gene

Unigene Clusters for FCRLA Gene

Fc receptor-like A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for FCRLA

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FCRLA Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d · 5e
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5: - - -
SP7: - - - -

Relevant External Links for FCRLA Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FCRLA Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FCRLA Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FCRLA Gene

This gene is overexpressed in Spleen (x10.7) and Small Intestine - Terminal Ileum (x4.9).

Protein differential expression in normal tissues from HIPED for FCRLA Gene

This gene is overexpressed in Blymphocyte (49.1) and Peripheral blood mononuclear cells (19.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FCRLA Gene

Protein tissue co-expression partners for FCRLA Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FCRLA Gene:


SOURCE GeneReport for Unigene cluster for FCRLA Gene:


mRNA Expression by UniProt/SwissProt for FCRLA Gene:

Tissue specificity: Expressed specifically in primary and secondary lymphoid tissues like lymph node, spleen and tonsil. Specifically expressed in B-cells with a high level in normal germinal center B-cells, centroblasts and in a subset of diffuse large B-cell lymphomas. Highly expressed in bone marrow B-cells and weakly in earlier B lineage cells. Expressed in pre-germinal and germinal center B-cells in secondary lymphoid tissues. Also expressed in melanoma and melanocytes.

Evidence on tissue expression from TISSUES for FCRLA Gene

  • Skin(4.5)
  • Blood(2.4)
  • Lymph node(2.4)
genes like me logo Genes that share expression patterns with FCRLA: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for FCRLA Gene

Orthologs for FCRLA Gene

This gene was present in the common ancestor of chordates.

Orthologs for FCRLA Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia FCRLA 34 33
  • 99.38 (n)
(Bos Taurus)
Mammalia FCRLA 34 33
  • 83.24 (n)
(Canis familiaris)
Mammalia FCRLA 34 33
  • 82.76 (n)
(Mus musculus)
Mammalia Fcrla 16 34 33
  • 77.48 (n)
(Rattus norvegicus)
Mammalia Fcrla 33
  • 75.2 (n)
(Monodelphis domestica)
Mammalia FCRLA 34
  • 47 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 29 (a)
-- 34
  • 22 (a)
-- 34
  • 17 (a)
(Gallus gallus)
Aves FCRL2 34
  • 21 (a)
Species where no ortholog for FCRLA was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FCRLA Gene

Gene Tree for FCRLA (if available)
Gene Tree for FCRLA (if available)
Evolutionary constrained regions (ECRs) for FCRLA: view image

Paralogs for FCRLA Gene

(4) SIMAP similar genes for FCRLA Gene using alignment to 9 proteins:

  • A6NC03_HUMAN
  • A6NL20_HUMAN
  • F5H720_HUMAN
  • F6RF20_HUMAN
  • F8W743_HUMAN
  • G3V1J2_HUMAN
genes like me logo Genes that share paralogs with FCRLA: view

Variants for FCRLA Gene

Sequence variations from dbSNP and Humsavar for FCRLA Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000559520 -- 161,712,904(+) A/G intron_variant
rs1000930126 -- 161,712,590(+) A/G intron_variant
rs1001016103 -- 161,708,733(+) C/T intron_variant
rs1001401873 -- 161,707,537(+) T/C intron_variant
rs1001880931 -- 161,712,382(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FCRLA Gene

Variant ID Type Subtype PubMed ID
esv2758972 CNV gain+loss 17122850
esv33393 CNV gain+loss 17666407
nsv428257 CNV loss 18775914
nsv464184 CNV gain 19166990
nsv524449 CNV loss 19592680
nsv548075 CNV gain 21841781

Variation tolerance for FCRLA Gene

Residual Variation Intolerance Score: 84.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.58; 65.16% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FCRLA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FCRLA Gene

Disorders for FCRLA Gene

Additional Disease Information for FCRLA

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for FCRLA Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FCRLA Gene

Publications for FCRLA Gene

  1. FCRL, a novel member of the leukocyte Fc receptor family possesses unique structural features. (PMID: 11754007) Mechetina LV … Taranin AV (European journal of immunology 2002) 2 3 4 58
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  3. Novel melanoma antigen, FCRL/FREB, identified by cDNA profile comparison using DNA chip are immunogenic in multiple melanoma patients. (PMID: 15551350) Inozume T … Kawakami Y (International journal of cancer 2005) 3 4 58
  4. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z … Henzel WJ (Protein science : a publication of the Protein Society 2004) 3 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for FCRLA Gene

Sources for FCRLA Gene

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