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Aliases for LINC01137 Gene

Subcategory (RNA class) for LINC01137 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01137 Gene

  • Long Intergenic Non-Protein Coding RNA 1137 2 3 5

External Ids for LINC01137 Gene

Previous GeneCards Identifiers for LINC01137 Gene

  • GC01M037924

Summaries for LINC01137 Gene

GeneCards Summary for LINC01137 Gene

LINC01137 (Long Intergenic Non-Protein Coding RNA 1137) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01137 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01137 Gene

Genomics for LINC01137 Gene

GeneHancer (GH) Regulatory Elements for LINC01137 Gene

Promoters and enhancers for LINC01137 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J037470 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 44.2 -4.9 -4920 18.3 CLOCK MLX DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SSRP1 GLIS1 ZC3H12A MIR6732 LINC01137 SNIP1 MTF1 SF3A3 GNL2 DNALI1 INPP5B C1orf109
GH01J037454 Enhancer 1.3 Ensembl ENCODE dbSUPER 36.4 +19.2 19176 1.7 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 BRCA1 E2F8 ELK1 ARID2 LINC01137 GC01M037470 PIR53142
GH01J037464 Enhancer 1 Ensembl ENCODE dbSUPER 34.7 +8.9 8874 2.5 MAFG MAFF ZNF316 GATA3 ZNF580 FOS MAFK EMSY LINC01137 GC01M037470 PIR53142
GH01J037451 Enhancer 0.7 ENCODE dbSUPER 33.9 +21.8 21775 1.7 FOSL1 SP1 JUND IKZF1 POU5F1 REST ETS1 LINC01137 ZC3H12A DNALI1 SNIP1 RPS27P9 RSPO1 GC01M037470 PIR53142
GH01J037448 Enhancer 0.8 Ensembl ENCODE 24.5 +25.2 25159 2.3 CTCF ZFHX2 GATA3 VEZF1 ZNF341 ZKSCAN8 CREB1 KDM1A FOS WT1 LINC01137 ZC3H12A DNALI1 SNIP1 RPS27P9 RSPO1 MEAF6 GC01M037470 PIR53142
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01137 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01137 Gene

Genomic Locations for LINC01137 Gene
chr1:37,454,879-37,474,443
(GRCh38/hg38)
Size:
19,565 bases
Orientation:
Minus strand
chr1:37,920,480-37,940,044
(GRCh37/hg19)
Size:
19,565 bases
Orientation:
Minus strand

Genomic View for LINC01137 Gene

Genes around LINC01137 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01137 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01137 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01137 Gene

Proteins for LINC01137 Gene

Post-translational modifications for LINC01137 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01137 Gene

Domains & Families for LINC01137 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01137 Gene

Function for LINC01137 Gene

Phenotypes From GWAS Catalog for LINC01137 Gene

Phenotypes for LINC01137 Gene

genes like me logo Genes that share phenotypes with LINC01137: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01137 Gene

Localization for LINC01137 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01137 Gene

Pathways & Interactions for LINC01137 Gene

SuperPathways for LINC01137 Gene

No Data Available

Interacting Proteins for LINC01137 Gene

Gene Ontology (GO) - Biological Process for LINC01137 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01137 Gene

Drugs & Compounds for LINC01137 Gene

No Compound Related Data Available

Transcripts for LINC01137 Gene

mRNA/cDNA for LINC01137 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01137 Gene

No ASD Table

Relevant External Links for LINC01137 Gene

GeneLoc Exon Structure for
LINC01137
ECgene alternative splicing isoforms for
LINC01137

Expression for LINC01137 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01137 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01137 Gene:

LINC01137
genes like me logo Genes that share expression patterns with LINC01137: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01137 Gene

Orthologs for LINC01137 Gene

Evolution for LINC01137 Gene

ENSEMBL:
Gene Tree for LINC01137 (if available)
TreeFam:
Gene Tree for LINC01137 (if available)

No data available for Orthologs for LINC01137 Gene

Paralogs for LINC01137 Gene

No data available for Paralogs for LINC01137 Gene

Variants for LINC01137 Gene

Sequence variations from dbSNP and Humsavar for LINC01137 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000019270 -- 37,469,830(-) A/C intron_variant
rs1000033213 -- 37,474,159(-) C/G non_coding_transcript_variant
rs1000285634 -- 37,462,776(-) T/A/G intron_variant
rs1000571424 -- 37,460,235(-) A/C intron_variant
rs1000622127 -- 37,460,556(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01137 Gene

Variant ID Type Subtype PubMed ID
esv2670000 CNV deletion 23128226
esv3585752 CNV loss 21293372

Additional Variant Information for LINC01137 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01137

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01137 Gene

Disorders for LINC01137 Gene

Additional Disease Information for LINC01137

No disorders were found for LINC01137 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01137 Gene

Publications for LINC01137 Gene

  1. The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus. (PMID: 25700553) Sakurai K … Dutta A (Molecular cancer research : MCR 2015) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC01137 Gene

Sources for LINC01137 Gene

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