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Aliases for SPRR3 Gene

Aliases for SPRR3 Gene

  • Small Proline Rich Protein 3 2 3 5
  • Small Proline-Rich Protein 3 2 3
  • 22 KDa Pancornulin 3 4
  • Cornifin Beta 3 4
  • Esophagin 3 4
  • SPRC 4

External Ids for SPRR3 Gene

Previous GeneCards Identifiers for SPRR3 Gene

  • GC01P150790
  • GC01P148756
  • GC01P149749
  • GC01P150190
  • GC01P149787
  • GC01P151240
  • GC01P152974
  • GC01P124337

Summaries for SPRR3 Gene

GeneCards Summary for SPRR3 Gene

SPRR3 (Small Proline Rich Protein 3) is a Protein Coding gene. Diseases associated with SPRR3 include Esophageal Cancer. Among its related pathways are Keratinization and Developmental Biology. Gene Ontology (GO) annotations related to this gene include structural molecule activity. An important paralog of this gene is SPRR1B.

UniProtKB/Swiss-Prot for SPRR3 Gene

  • Cross-linked envelope protein of keratinocytes.

Gene Wiki entry for SPRR3 Gene

Additional gene information for SPRR3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPRR3 Gene

Genomics for SPRR3 Gene

GeneHancer (GH) Regulatory Elements for SPRR3 Gene

Promoters and enhancers for SPRR3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J153001 Promoter 0.7 EPDnew 650.7 0.0 -17 0.1 FOSL1 CREB1 ATF7 SPRR3 GC01P152985
GH01J153032 Enhancer 0.7 ENCODE 10.2 +30.8 30812 2.6 CTCF JUN RAD21 FOSL1 SCRT2 SMC3 ZSCAN29 FOS FOSL2 IKZF2 SPRR1B LOC105371446 SPRR3 SPRR2D
GH01J152953 Enhancer 0.6 ENCODE 10 -47.5 -47485 2 SMARCE1 JUN DPF2 ZNF217 FOSL1 CTBP1 JUND GATA3 MTA1 CREB1 LOC105371446 SPRR1A SPRR3 S100A16 LINC01527 SPRR4
GH01J152967 Enhancer 0.5 ENCODE 9.9 -34.4 -34407 0.2 VEZF1 JUNB FOS KLF4 BATF IRF4 SPRR3 SPRR4 LINC01527
GH01J153586 Enhancer 0.5 ENCODE 4.6 +585.5 585510 1.4 ZNF121 RFX1 IKZF1 ZNF266 ZBTB17 PIR44602 CRTC2 SLC27A3 UBAP2L CHTOP CREB3L4 INTS3 ENSG00000238279 S100A13 ILF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPRR3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SPRR3 gene promoter:
  • C/EBPalpha
  • Ik-3
  • E47
  • p300
  • Hand1
  • ZID
  • AREB6
  • LCR-F1
  • Ik-1

Genomic Locations for SPRR3 Gene

Genomic Locations for SPRR3 Gene
chr1:153,001,747-153,003,856
(GRCh38/hg38)
Size:
2,110 bases
Orientation:
Plus strand
chr1:152,974,223-152,976,332
(GRCh37/hg19)
Size:
2,110 bases
Orientation:
Plus strand

Genomic View for SPRR3 Gene

Genes around SPRR3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPRR3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPRR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPRR3 Gene

Proteins for SPRR3 Gene

  • Protein details for SPRR3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UBC9-SPRR3_HUMAN
    Recommended name:
    Small proline-rich protein 3
    Protein Accession:
    Q9UBC9
    Secondary Accessions:
    • A5YKK8
    • B2R4G8
    • D3DV32
    • O75597
    • Q4ZGI7
    • Q5T525
    • Q8NET7
    • Q9UDG3

    Protein attributes for SPRR3 Gene

    Size:
    169 amino acids
    Molecular mass:
    18154 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPRR3 Gene

Post-translational modifications for SPRR3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPRR3 Gene

No data available for DME Specific Peptides for SPRR3 Gene

Domains & Families for SPRR3 Gene

Gene Families for SPRR3 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Predicted intracellular proteins

Protein Domains for SPRR3 Gene

Suggested Antigen Peptide Sequences for SPRR3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UBC9

UniProtKB/Swiss-Prot:

SPRR3_HUMAN :
  • Belongs to the cornifin (SPRR) family.
Family:
  • Belongs to the cornifin (SPRR) family.
genes like me logo Genes that share domains with SPRR3: view

Function for SPRR3 Gene

Molecular function for SPRR3 Gene

UniProtKB/Swiss-Prot Function:
Cross-linked envelope protein of keratinocytes.
UniProtKB/Swiss-Prot Induction:
During squamous differentiation of epidermal keratinocytes.
GENATLAS Biochemistry:
small proline rich protein 3,precursor of cornified cell envelope,cornifin,clustered in the epidermal differentiation complex (EDC)

Gene Ontology (GO) - Molecular Function for SPRR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005198 structural molecule activity TAS 9889002
GO:0005515 protein binding IPI 10510474
genes like me logo Genes that share ontologies with SPRR3: view
genes like me logo Genes that share phenotypes with SPRR3: view

Animal Models for SPRR3 Gene

MGI Knock Outs for SPRR3:
  • Sprr3 Sprr3<tm1.1Ppy>
  • Sprr3 Sprr3<tm1.1(KOMP)Vlcg>

Animal Model Products

miRNA for SPRR3 Gene

miRTarBase miRNAs that target SPRR3

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SPRR3 Gene

Localization for SPRR3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPRR3 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPRR3 gene
Compartment Confidence
extracellular 5
cytosol 5
plasma membrane 4
golgi apparatus 4

Gene Ontology (GO) - Cellular Components for SPRR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001533 cornified envelope TAS --
GO:0005737 cytoplasm IBA --
GO:0005794 Golgi apparatus IDA 19211270
GO:0005829 cytosol TAS --
GO:0048471 perinuclear region of cytoplasm IDA 19211270
genes like me logo Genes that share ontologies with SPRR3: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SPRR3 Gene

Pathways & Interactions for SPRR3 Gene

genes like me logo Genes that share pathways with SPRR3: view

Pathways by source for SPRR3 Gene

Gene Ontology (GO) - Biological Process for SPRR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008544 epidermis development NAS 8325635
GO:0018149 peptide cross-linking IBA --
GO:0030216 keratinocyte differentiation NAS 8325635
GO:0031424 keratinization IEA --
GO:0042060 wound healing TAS 10510474
genes like me logo Genes that share ontologies with SPRR3: view

No data available for SIGNOR curated interactions for SPRR3 Gene

Drugs & Compounds for SPRR3 Gene

(2) Drugs for SPRR3 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for SPRR3 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with SPRR3: view

Transcripts for SPRR3 Gene

mRNA/cDNA for SPRR3 Gene

Unigene Clusters for SPRR3 Gene

Small proline-rich protein 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPRR3 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1: -
SP2:
SP3: - -

Relevant External Links for SPRR3 Gene

GeneLoc Exon Structure for
SPRR3
ECgene alternative splicing isoforms for
SPRR3

Expression for SPRR3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPRR3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPRR3 Gene

This gene is overexpressed in Esophagus - Mucosa (x29.1), Vagina (x10.2), Cervix - Ectocervix (x8.8), and Minor Salivary Gland (x4.6).

Protein differential expression in normal tissues from HIPED for SPRR3 Gene

This gene is overexpressed in Cervix (47.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SPRR3 Gene



Protein tissue co-expression partners for SPRR3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SPRR3 Gene:

SPRR3

SOURCE GeneReport for Unigene cluster for SPRR3 Gene:

Hs.139322

Evidence on tissue expression from TISSUES for SPRR3 Gene

  • Skin(4.4)
  • Muscle(4.3)
  • Saliva(4.2)
  • Blood(4)
  • Eye(4)
genes like me logo Genes that share expression patterns with SPRR3: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPRR3 Gene

Orthologs for SPRR3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPRR3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPRR3 34 33
  • 98.55 (n)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100685649 33
  • 77.25 (n)
SPRR3 34
  • 37 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sprr3 16 34 33
  • 68.86 (n)
rat
(Rattus norvegicus)
Mammalia Sprr3 33
  • 68.04 (n)
cow
(Bos Taurus)
Mammalia SPRR3 34
  • 67 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
OneToMany
Species where no ortholog for SPRR3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPRR3 Gene

ENSEMBL:
Gene Tree for SPRR3 (if available)
TreeFam:
Gene Tree for SPRR3 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SPRR3: view image

Paralogs for SPRR3 Gene

Paralogs for SPRR3 Gene

(2) SIMAP similar genes for SPRR3 Gene using alignment to 3 proteins:

  • SPRR3_HUMAN
  • B1AN48_HUMAN
  • F5GZ12_HUMAN
genes like me logo Genes that share paralogs with SPRR3: view

Variants for SPRR3 Gene

Sequence variations from dbSNP and Humsavar for SPRR3 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000808636 -- 153,002,354(+) C/A intron_variant
rs1001403725 -- 153,002,405(+) G/A intron_variant
rs1002835801 -- 153,003,656(+) C/A 3_prime_UTR_variant
rs1002912325 -- 153,002,437(+) G/A intron_variant
rs1004394387 -- 153,003,936(+) G/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SPRR3 Gene

Variant ID Type Subtype PubMed ID
nsv547899 CNV gain 21841781
nsv831592 CNV gain 17160897
nsv998873 CNV gain 25217958

Variation tolerance for SPRR3 Gene

Residual Variation Intolerance Score: 69.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.03; 75.06% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SPRR3 Gene

Human Gene Mutation Database (HGMD)
SPRR3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPRR3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPRR3 Gene

Disorders for SPRR3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SPRR3 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
esophageal cancer
  • esophageal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search SPRR3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SPRR3

genes like me logo Genes that share disorders with SPRR3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SPRR3 Gene

Publications for SPRR3 Gene

  1. Molecular characterization and evolution of the SPRR family of keratinocyte differentiation markers encoding small proline-rich proteins. (PMID: 8325635) Gibbs S … Backendorf C (Genomics 1993) 2 3 4 22 58
  2. Esophagin cDNA cloning and characterization: a tissue-specific member of the small proline-rich protein family that is not expressed in esophageal tumors. (PMID: 8809402) Abraham JM … Meltzer SJ (Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research 1996) 3 4 22 58
  3. Characterization of two isoforms of human SPRR3 from saliva of preterm human newborn and autoptic fetal oral mucosa, parotid and submandibular gland samples. (PMID: 20599699) Manconi B … Messana I (Biochemical and biophysical research communications 2010) 3 4 58
  4. Regulation of the atheroma-enriched protein, SPRR3, in vascular smooth muscle cells through cyclic strain is dependent on integrin alpha1beta1/collagen interaction. (PMID: 18832573) Pyle AL … Young PP (The American journal of pathology 2008) 3 22 58
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58

Products for SPRR3 Gene

Sources for SPRR3 Gene

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