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Aliases for WFDC21P Gene

Aliases for WFDC21P Gene

  • WAP Four-Disulfide Core Domain 21, Pseudogene 2 3 5
  • Long Non-Coding RNA, Dendritic Cell Differentiation 2 3
  • Lnc-Dendritic Cell LncRNA 2 3
  • WDNM1-Like, Pseudogene 2
  • WDNM1-Like Pseudogene 3
  • Linc-DC 3
  • Lnc-DC 3
  • LNCDC 3

External Ids for WFDC21P Gene

Summaries for WFDC21P Gene

GeneCards Summary for WFDC21P Gene

WFDC21P (WAP Four-Disulfide Core Domain 21, Pseudogene) is a Pseudogene. Diseases associated with WFDC21P include Pre-Eclampsia and Coronary Artery Anomaly.

Additional gene information for WFDC21P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WFDC21P Gene

Genomics for WFDC21P Gene

GeneHancer (GH) Regulatory Elements for WFDC21P Gene

Promoters and enhancers for WFDC21P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060089 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.7 650 4.5 BCOR MEIS2 PKNOX1 ZMYM3 BATF KLF5 ZNF280A MTA3 CBX5 EED WFDC21P HEATR6 ENSG00000275860 RNFT1 LOC105371849
GH17J059781 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 4.9 +304.2 304211 11.9 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 RPS6KB1 TUBD1 HEATR6 PPM1D RNFT1-DT SKA2 LOC100996660 MIR21 RNU6-450P TRIM37
GH17J059751 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.4 +330.4 330401 20.4 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A YBX1 FEZF1 RPS6KB1 TUBD1 NDUFB8P2 PPM1D RNFT1-DT ENSG00000275860 ENSG00000224738 MIR21 RNU6-450P HEATR6
GH17J059801 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.3 +287.4 287378 5.3 HDGF FOXA2 ARID4B NEUROD1 ZNF2 NCOA2 YY1 E2F8 ZNF207 CAVIN1 NDUFB8P2 RPS6KB1 PPM1D RNFT1-DT TUBD1 HEATR6 RNFT1 ENSG00000275860 DHX40 WFDC21P
GH17J059797 Enhancer 0.4 Ensembl dbSUPER 4.4 +294.2 294184 0.2 WFDC21P GC17M059791 GC17M059826 VMP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around WFDC21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for WFDC21P Gene

Genomic Locations for WFDC21P Gene
chr17:60,083,566-60,091,885
(GRCh38/hg38)
Size:
8,320 bases
Orientation:
Minus strand
chr17:58,160,927-58,169,246
(GRCh37/hg19)
Size:
8,320 bases
Orientation:
Minus strand

Genomic View for WFDC21P Gene

Genes around WFDC21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WFDC21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WFDC21P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WFDC21P Gene

Proteins for WFDC21P Gene

Post-translational modifications for WFDC21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WFDC21P Gene

Domains & Families for WFDC21P Gene

Gene Families for WFDC21P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WFDC21P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WFDC21P Gene

Function for WFDC21P Gene

Phenotypes From GWAS Catalog for WFDC21P Gene

Phenotypes for WFDC21P Gene

genes like me logo Genes that share phenotypes with WFDC21P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WFDC21P Gene

Localization for WFDC21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WFDC21P Gene

Pathways & Interactions for WFDC21P Gene

SuperPathways for WFDC21P Gene

No Data Available

Interacting Proteins for WFDC21P Gene

Gene Ontology (GO) - Biological Process for WFDC21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WFDC21P Gene

Drugs & Compounds for WFDC21P Gene

No Compound Related Data Available

Transcripts for WFDC21P Gene

mRNA/cDNA for WFDC21P Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for WFDC21P Gene

No ASD Table

Relevant External Links for WFDC21P Gene

GeneLoc Exon Structure for
WFDC21P
ECgene alternative splicing isoforms for
WFDC21P

Expression for WFDC21P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WFDC21P Gene

NURSA nuclear receptor signaling pathways regulating expression of WFDC21P Gene:

WFDC21P
genes like me logo Genes that share expression patterns with WFDC21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WFDC21P Gene

Orthologs for WFDC21P Gene

Evolution for WFDC21P Gene

ENSEMBL:
Gene Tree for WFDC21P (if available)
TreeFam:
Gene Tree for WFDC21P (if available)

No data available for Orthologs for WFDC21P Gene

Paralogs for WFDC21P Gene

No data available for Paralogs for WFDC21P Gene

Variants for WFDC21P Gene

Sequence variations from dbSNP and Humsavar for WFDC21P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000767040 -- 60,088,079(-) C/G intron_variant
rs1001618989 -- 60,084,325(-) C/T intron_variant
rs1001913479 -- 60,085,745(-) G/A intron_variant
rs1001983802 -- 60,085,380(-) T/C intron_variant
rs1002357294 -- 60,086,657(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for WFDC21P Gene

Variant ID Type Subtype PubMed ID
esv3640918 CNV gain 21293372
nsv499622 OTHER inversion 21111241
nsv7295 OTHER inversion 18451855
nsv833504 CNV gain 17160897
nsv9579 CNV gain+loss 18304495

Additional Variant Information for WFDC21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WFDC21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WFDC21P Gene

Disorders for WFDC21P Gene

MalaCards: The human disease database

(4) MalaCards diseases for WFDC21P Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
pre-eclampsia
  • toxemia of pregnancy
coronary artery anomaly
  • coronary heart disease
melanoma
  • malignant melanoma
diabetes mellitus, noninsulin-dependent
  • niddm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for WFDC21P

genes like me logo Genes that share disorders with WFDC21P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for WFDC21P Gene

Publications for WFDC21P Gene

  1. Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor. (PMID: 26158411) Wei G … Chen R (Oncotarget 2015) 2 3 58
  2. The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. (PMID: 24744378) Wang P … Cao X (Science (New York, N.Y.) 2014) 2 3 58
  3. Identification of long non-coding RNAs GAS5, linc0597 and lnc-DC in plasma as novel biomarkers for systemic lupus erythematosus. (PMID: 28423570) Wu GC … Ye DQ (Oncotarget 2017) 3 58
  4. Lnc-DC mediates the over-maturation of decidual dendritic cells and induces the increase in Th1 cells in preeclampsia. (PMID: 28185352) Zhang W … Ding Y (American journal of reproductive immunology (New York, N.Y. : 1989) 2017) 3 58
  5. Upregulation of LncDQ is Associated with Poor Prognosis and Promotes Tumor Progression via Epigenetic Regulation of the EMT Pathway in HCC. (PMID: 29669339) Zeng B … Liu J (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3

Products for WFDC21P Gene

Sources for WFDC21P Gene

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