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Aliases for SNHG6 Gene

Subcategory (RNA class) for SNHG6 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG6 Gene

  • Small Nucleolar RNA Host Gene 6 2 3 5
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 6 3
  • Small Nucleolar RNA Host Gene 6 (Non-Protein Coding) 2
  • Non-Protein Coding RNA 58 2
  • HBII-276 Host 3
  • HBII-276HG 3
  • NCRNA00058 3
  • U87 Host 3
  • U87HG 3

External Ids for SNHG6 Gene

Previous GeneCards Identifiers for SNHG6 Gene

  • GC08M067996
  • GC08M067834
  • GC08M063326

Summaries for SNHG6 Gene

GeneCards Summary for SNHG6 Gene

SNHG6 (Small Nucleolar RNA Host Gene 6) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNHG6 include Colon Adenocarcinoma and Microvascular Complications Of Diabetes 3.

Additional gene information for SNHG6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG6 Gene

Genomics for SNHG6 Gene

GeneHancer (GH) Regulatory Elements for SNHG6 Gene

Promoters and enhancers for SNHG6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J066922 Promoter/Enhancer 1.6 Ensembl ENCODE 650.7 +1.8 1793 5.1 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 SNHG6 ARFGEF1 C8orf44 CSPP1 TCF24 VCPIP1 SNORD87 GC08M066924 GC08M066923 MCMDC2
GH08J067028 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.4 -102.6 -102574 1.9 PKNOX1 ATF1 ARID4B SIN3A FEZF1 BRCA1 GLIS2 NCOA1 REST KAT8 PPP1R42 LOC105375885 CSPP1 COPS5 SNHG6 SNORD87
GH08J066961 Enhancer 1 Ensembl ENCODE 11.6 -35.8 -35833 2.4 PKNOX1 RAD21 ZNF335 GLIS2 ZNF366 SCRT2 RUNX3 SP3 CBFB KLF16 TCF24 SNORD87 SNHG6 PPP1R42 CSPP1 COPS5
GH08J066921 Enhancer 0.3 ENCODE 0.7 +4.6 4577 0.2 POLR2A GC08M066923 GC08M066924 SNORD87 SNHG6 MCMDC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNHG6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG6 gene promoter:
  • p53
  • c-Jun
  • c-Fos
  • AP-1
  • POU2F1a
  • POU2F1
  • HOXA9
  • HOXA9B
  • Meis-1
  • Meis-1a

Genomic Locations for SNHG6 Gene

Genomic Locations for SNHG6 Gene
chr8:66,921,684-66,926,398
(GRCh38/hg38)
Size:
4,715 bases
Orientation:
Minus strand
chr8:67,833,919-67,838,633
(GRCh37/hg19)
Size:
4,715 bases
Orientation:
Minus strand

Genomic View for SNHG6 Gene

Genes around SNHG6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG6 Gene

Proteins for SNHG6 Gene

Post-translational modifications for SNHG6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG6 Gene

Domains & Families for SNHG6 Gene

Gene Families for SNHG6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG6 Gene

Function for SNHG6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG6 Gene

Localization for SNHG6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG6 Gene

Pathways & Interactions for SNHG6 Gene

SuperPathways for SNHG6 Gene

No Data Available

Interacting Proteins for SNHG6 Gene

Gene Ontology (GO) - Biological Process for SNHG6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG6 Gene

Drugs & Compounds for SNHG6 Gene

No Compound Related Data Available

Transcripts for SNHG6 Gene

mRNA/cDNA for SNHG6 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for SNHG6 Gene

Small nucleolar RNA host gene 6 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG6 Gene

No ASD Table

Relevant External Links for SNHG6 Gene

GeneLoc Exon Structure for
SNHG6
ECgene alternative splicing isoforms for
SNHG6

Expression for SNHG6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG6 Gene:

SNHG6

SOURCE GeneReport for Unigene cluster for SNHG6 Gene:

Hs.372680
genes like me logo Genes that share expression patterns with SNHG6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG6 Gene

Orthologs for SNHG6 Gene

Evolution for SNHG6 Gene

ENSEMBL:
Gene Tree for SNHG6 (if available)
TreeFam:
Gene Tree for SNHG6 (if available)

No data available for Orthologs for SNHG6 Gene

Paralogs for SNHG6 Gene

No data available for Paralogs for SNHG6 Gene

Variants for SNHG6 Gene

Sequence variations from dbSNP and Humsavar for SNHG6 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001045797 -- 66,921,651(-) G/A/C downstream_transcript_variant
rs1001317180 -- 66,927,279(-) T/A upstream_transcript_variant
rs1002736100 -- 66,921,954(-) T/G non_coding_transcript_variant
rs1003014452 -- 66,925,555(-) G/A upstream_transcript_variant
rs1003046315 -- 66,924,685(-) C/G/T intron_variant

Additional Variant Information for SNHG6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG6

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG6 Gene

Disorders for SNHG6 Gene

MalaCards: The human disease database

(7) MalaCards diseases for SNHG6 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colon adenocarcinoma
  • adenocarcinoma of colon
microvascular complications of diabetes 3
  • end-stage renal disease, diabetic
hereditary hemorrhagic telangiectasia
  • hht
hepatocellular carcinoma
  • hcc
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
Search SNHG6 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SNHG6

genes like me logo Genes that share disorders with SNHG6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG6 Gene

Publications for SNHG6 Gene

  1. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. (PMID: 16226852) Makarova JA … Kramerov DA (Gene 2005) 2 3 22 58
  2. LncRNA SNHG6 is Associated with Poor Prognosis of Gastric Cancer and Promotes Cell Proliferation and EMT through Epigenetically Silencing p27 and Sponging miR-101-3p. (PMID: 28683446) Yan K … Zhu Y (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017) 2 3 58
  3. The long non-coding RNA, SNHG6-003, functions as a competing endogenous RNA to promote the progression of hepatocellular carcinoma. (PMID: 27530352) Cao C … Liu L (Oncogene 2017) 3 58
  4. Upregulation of SNHG6 regulates ZEB1 expression by competitively binding miR-101-3p and interacting with UPF1 in hepatocellular carcinoma. (PMID: 27702662) Chang L … Liu Q (Cancer letters 2016) 3 58
  5. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 58

Products for SNHG6 Gene

Sources for SNHG6 Gene

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