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Aliases for MYT1 Gene

Aliases for MYT1 Gene

  • Myelin Transcription Factor 1 2 3 3 5
  • Neural Zinc Finger Transcription Factor 2 2 3
  • Myelin Transcription Factor I 3 4
  • PLPB1 3 4
  • MTF1 3 4
  • MYTI 3 4
  • Proteolipid Protein Binding Protein 3
  • Proteolipid Protein-Binding Protein 4
  • C20orf36 3
  • KIAA0835 4
  • KIAA1050 4
  • ZC2H2C1 3
  • ZC2HC4A 3
  • NZF2 3
  • MyT1 4
  • MyTI 4

External Ids for MYT1 Gene

Previous HGNC Symbols for MYT1 Gene

  • PLPB1

Previous GeneCards Identifiers for MYT1 Gene

  • GC20P062673
  • GC20P063475
  • GC20P063522
  • GC20P062253
  • GC20P062266
  • GC20P062795
  • GC20P059521
  • GC20P062796

Summaries for MYT1 Gene

Entrez Gene Summary for MYT1 Gene

  • The protein encoded by this gene is a member of a family of neural specific, zinc finger-containing DNA-binding proteins. The protein binds to the promoter regions of proteolipid proteins of the central nervous system and plays a role in the developing nervous system. [provided by RefSeq, Jul 2008]

GeneCards Summary for MYT1 Gene

MYT1 (Myelin Transcription Factor 1) is a Protein Coding gene. Diseases associated with MYT1 include Periventricular Leukomalacia and Hemifacial Microsomia. Among its related pathways are Integrated Breast Cancer Pathway and Mitotic G1-G1/S phases. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and enhancer sequence-specific DNA binding. An important paralog of this gene is MYT1L.

UniProtKB/Swiss-Prot for MYT1 Gene

  • Binds to the promoter region of genes encoding proteolipid proteins of the central nervous system. May play a role in the development of neurons and oligodendroglia in the CNS. May regulate a critical transition point in oligodendrocyte lineage development by modulating oligodendrocyte progenitor proliferation relative to terminal differentiation and up-regulation of myelin gene transcription.

Gene Wiki entry for MYT1 Gene

Additional gene information for MYT1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYT1 Gene

Genomics for MYT1 Gene

GeneHancer (GH) Regulatory Elements for MYT1 Gene

Promoters and enhancers for MYT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J064165 Promoter/Enhancer 1.1 EPDnew dbSUPER 650.2 +62.0 62039 0.1 MXI1 BHLHE40 SREBF1 NONO FOXK2 POLR2A PRDM10 CUX1 EZH2 MYT1 MIR647 UCKL1 ENSG00000237371 GMEB2 CICP4 GC20P064162 GC20P064163 GC20M064230
GH20J064104 Enhancer 0.9 ENCODE 650.7 -0.2 -191 0.2 RB1 SIN3A ZNF2 RAD21 ZNF48 ZNF335 ZNF121 GLIS2 ARID2 ZNF143 MYT1 LKAAEAR1
GH20J064164 Promoter/Enhancer 0.9 EPDnew dbSUPER 650.2 +62.2 62193 0.1 MXI1 POLR2A MYT1 GC20P064162 GC20P064163 GC20M064230
GH20J064151 Promoter/Enhancer 0.7 EPDnew ENCODE 650.2 +49.3 49329 0.2 MYT1 LOC105372727 GC20P064163 GC20P064162
GH20J064103 Enhancer 0.6 ENCODE 650.7 +0.2 169 0.2 CTCF MXI1 L3MBTL2 ZNF189 ZNF335 ZGPAT VEZF1 RBM22 ZFX EZH2 MYT1 NPBWR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MYT1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MYT1 gene promoter:
  • deltaCREB
  • CREB
  • Chx10
  • HFH-3
  • FOXI1
  • C/EBPalpha
  • HNF-3beta
  • MyoD
  • POU2F1a
  • POU2F1

Genomic Locations for MYT1 Gene

Genomic Locations for MYT1 Gene
chr20:64,102,394-64,242,253
(GRCh38/hg38)
Size:
139,860 bases
Orientation:
Plus strand
chr20:62,783,144-62,873,606
(GRCh37/hg19)
Size:
90,463 bases
Orientation:
Plus strand

Genomic View for MYT1 Gene

Genes around MYT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYT1 Gene

Proteins for MYT1 Gene

  • Protein details for MYT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q01538-MYT1_HUMAN
    Recommended name:
    Myelin transcription factor 1
    Protein Accession:
    Q01538
    Secondary Accessions:
    • E1P5H0
    • F5H7M8
    • O94922
    • Q7Z5W2
    • Q9UPV2

    Protein attributes for MYT1 Gene

    Size:
    1121 amino acids
    Molecular mass:
    122329 Da
    Quaternary structure:
    • Interacts with STEAP3.
    SequenceCaution:
    • Sequence=BAA74858.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for MYT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MYT1 Gene

Post-translational modifications for MYT1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MYT1 Gene

No data available for DME Specific Peptides for MYT1 Gene

Domains & Families for MYT1 Gene

Gene Families for MYT1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for MYT1 Gene

Suggested Antigen Peptide Sequences for MYT1 Gene

Graphical View of Domain Structure for InterPro Entry

Q01538

UniProtKB/Swiss-Prot:

MYT1_HUMAN :
  • Contains 7 zinc fingers of the C2HC class arranged in two widely separated clusters. These two domains of DNA binding can function independently and recognize the same DNA sequence.
  • Belongs to the MYT1 family.
Domain:
  • Contains 7 zinc fingers of the C2HC class arranged in two widely separated clusters. These two domains of DNA binding can function independently and recognize the same DNA sequence.
Family:
  • Belongs to the MYT1 family.
genes like me logo Genes that share domains with MYT1: view

Function for MYT1 Gene

Molecular function for MYT1 Gene

UniProtKB/Swiss-Prot Function:
Binds to the promoter region of genes encoding proteolipid proteins of the central nervous system. May play a role in the development of neurons and oligodendroglia in the CNS. May regulate a critical transition point in oligodendrocyte lineage development by modulating oligodendrocyte progenitor proliferation relative to terminal differentiation and up-regulation of myelin gene transcription.

Phenotypes From GWAS Catalog for MYT1 Gene

Gene Ontology (GO) - Molecular Function for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS 19274049
GO:0003677 DNA binding IEA --
GO:0003700 DNA binding transcription factor activity NAS 1280325
GO:0005515 protein binding IEA --
GO:0008270 zinc ion binding NAS 1280325
genes like me logo Genes that share ontologies with MYT1: view
genes like me logo Genes that share phenotypes with MYT1: view

Animal Models for MYT1 Gene

MGI Knock Outs for MYT1:
  • Myt1 Myt1<tm1.1Ggu>

Animal Model Products

miRNA for MYT1 Gene

miRTarBase miRNAs that target MYT1

Clone Products

  • Addgene plasmids for MYT1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MYT1 Gene

Localization for MYT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MYT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MYT1 gene
Compartment Confidence
nucleus 5
cytosol 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Nucleoplasm (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus NAS 1280325
GO:0005654 nucleoplasm IDA --
GO:0005829 cytosol IDA --
genes like me logo Genes that share ontologies with MYT1: view

Pathways & Interactions for MYT1 Gene

genes like me logo Genes that share pathways with MYT1: view

Pathways by source for MYT1 Gene

Gene Ontology (GO) - Biological Process for MYT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated NAS 1280325
GO:0006357 regulation of transcription by RNA polymerase II IEA --
GO:0007275 multicellular organism development IEA --
GO:0007399 nervous system development IEA --
genes like me logo Genes that share ontologies with MYT1: view

No data available for SIGNOR curated interactions for MYT1 Gene

Drugs & Compounds for MYT1 Gene

(1) Drugs for MYT1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(2) Additional Compounds for MYT1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with MYT1: view

Transcripts for MYT1 Gene

mRNA/cDNA for MYT1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(296) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYT1 Gene

Myelin transcription factor 1:
Representative Sequences:

Clone Products

  • Addgene plasmids for MYT1

Alternative Splicing Database (ASD) splice patterns (SP) for MYT1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21 ^ 22a · 22b · 22c · 22d ·
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - -
SP4: - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - -
SP8: - -
SP9:
SP10: -
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:

ExUns: 22e ^ 23 ^ 24 ^ 25a · 25b ^ 26a · 26b · 26c ^ 27 ^ 28a · 28b ^ 29 ^ 30a · 30b · 30c · 30d
SP1:
SP2:
SP3: - - - - -
SP4: - - - -
SP5: - - - - - -
SP6: - - - - - - - - - - -
SP7: - -
SP8: - -
SP9:
SP10: - -
SP11:
SP12: -
SP13:
SP14:
SP15: - -
SP16:

Relevant External Links for MYT1 Gene

GeneLoc Exon Structure for
MYT1
ECgene alternative splicing isoforms for
MYT1

Expression for MYT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYT1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MYT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x14.9) and Brain - Cerebellum (x13.9).

Protein differential expression in normal tissues from HIPED for MYT1 Gene

This gene is overexpressed in Retina (35.0), Platelet (19.2), and NK cells (12.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for MYT1 Gene



Protein tissue co-expression partners for MYT1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MYT1 Gene:

MYT1

SOURCE GeneReport for Unigene cluster for MYT1 Gene:

Hs.279562

mRNA Expression by UniProt/SwissProt for MYT1 Gene:

Q01538-MYT1_HUMAN
Tissue specificity: Mostly in developing nervous system. Expressed in neural progenitors and oligodendrocyte lineage cells. More highly expressed in oligodendrocyte progenitors than in differentiated oligodendrocytes.

Evidence on tissue expression from TISSUES for MYT1 Gene

  • Nervous system(4.5)
genes like me logo Genes that share expression patterns with MYT1: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for MYT1 Gene

Orthologs for MYT1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MYT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MYT1 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MYT1 34 33
  • 88.32 (n)
OneToOne
cow
(Bos Taurus)
Mammalia MYT1 34 33
  • 88.08 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Myt1 33
  • 87.52 (n)
mouse
(Mus musculus)
Mammalia Myt1 16 34 33
  • 86.14 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MYT1 34
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MYT1 34
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves MYT1 34 33
  • 79.14 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MYT1 34
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100490628 33
  • 75.98 (n)
African clawed frog
(Xenopus laevis)
Amphibia LOC397982 33
zebrafish
(Danio rerio)
Actinopterygii myt1a 34 33
  • 71.52 (n)
OneToMany
myt1b 34
  • 57 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG43689 34
  • 10 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ztf-11 34
  • 18 (a)
OneToMany
soybean
(Glycine max)
eudicotyledons Gma.17722 33
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 18 (a)
OneToMany
Cin.8435 33
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8435 33
Species where no ortholog for MYT1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MYT1 Gene

ENSEMBL:
Gene Tree for MYT1 (if available)
TreeFam:
Gene Tree for MYT1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for MYT1: view image

Paralogs for MYT1 Gene

Paralogs for MYT1 Gene

(2) SIMAP similar genes for MYT1 Gene using alignment to 4 proteins:

  • MYT1_HUMAN
  • F5H7M8_HUMAN
  • Q6P6D5_HUMAN
  • Q7Z5W2_HUMAN

Pseudogenes.org Pseudogenes for MYT1 Gene

genes like me logo Genes that share paralogs with MYT1: view

Variants for MYT1 Gene

Sequence variations from dbSNP and Humsavar for MYT1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000014079 -- 64,176,848(+) T/C intron_variant
rs1000023345 -- 64,211,461(+) T/C intron_variant
rs1000031556 -- 64,182,445(+) C/T intron_variant
rs1000061962 -- 64,230,381(+) C/T intron_variant
rs1000123445 -- 64,218,733(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MYT1 Gene

Variant ID Type Subtype PubMed ID
dgv2454e59 CNV duplication 20981092
dgv4347n100 CNV gain 25217958
dgv4348n100 CNV gain 25217958
esv1005570 CNV deletion 20482838
esv1049699 CNV insertion 17803354
esv1114131 CNV deletion 17803354
esv1143799 CNV deletion 17803354
esv1395726 CNV deletion 17803354
esv1433479 CNV insertion 17803354
esv1483804 CNV deletion 17803354
esv1552174 CNV deletion 17803354
esv2097509 CNV deletion 18987734
esv2317556 CNV deletion 18987734
esv23921 CNV gain+loss 19812545
esv24888 CNV loss 19812545
esv2559642 CNV insertion 19546169
esv2758807 CNV gain+loss 17122850
esv3568101 CNV loss 25503493
esv3646333 CNV loss 21293372
esv3646334 CNV gain 21293372
esv3646335 CNV gain 21293372
esv3646336 CNV gain 21293372
nsv1064470 CNV gain 25217958
nsv1067529 CNV gain 25217958
nsv1071718 CNV deletion 25765185
nsv1114238 CNV deletion 24896259
nsv1116883 CNV deletion 24896259
nsv1119653 CNV deletion 24896259
nsv1125223 CNV insertion 24896259
nsv1125959 CNV deletion 24896259
nsv1130775 CNV deletion 24896259
nsv1137535 CNV deletion 24896259
nsv1142316 CNV tandem duplication 24896259
nsv1143214 CNV deletion 24896259
nsv1143217 CNV deletion 24896259
nsv1143998 CNV deletion 24896259
nsv1148380 CNV deletion 26484159
nsv1151679 CNV deletion 26484159
nsv1153326 CNV deletion 26484159
nsv179382 CNV deletion 16902084
nsv179519 CNV deletion 16902084
nsv428381 CNV gain+loss 18775914
nsv470564 CNV gain 18288195
nsv524962 CNV loss 19592680
nsv527137 CNV loss 19592680
nsv586863 CNV loss 21841781
nsv821475 CNV deletion 20802225
nsv9833 CNV gain 18304495

Variation tolerance for MYT1 Gene

Residual Variation Intolerance Score: 20.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.52; 55.49% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MYT1 Gene

Human Gene Mutation Database (HGMD)
MYT1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MYT1 Gene

Disorders for MYT1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for MYT1 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search MYT1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MYT1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MYT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MYT1 Gene

Publications for MYT1 Gene

  1. Myelin transcription factor 1 (Myt1) modulates the proliferation and differentiation of oligodendrocyte lineage cells. (PMID: 14962745) Nielsen JA … Armstrong RC (Molecular and cellular neurosciences 2004) 3 4 22 58
  2. Expression of myelin transcription factor I (MyTI), a "zinc-finger" DNA-binding protein, in developing oligodendrocytes. (PMID: 8530187) Armstrong RC … Hudson LD (Glia 1995) 3 4 22 58
  3. Novel member of the zinc finger superfamily: A C2-HC finger that recognizes a glia-specific gene. (PMID: 1280325) Kim JG … Hudson LD (Molecular and cellular biology 1992) 2 3 4 58
  4. Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PMID: 18950845) Vega A … Carracedo A (Gynecologic oncology 2009) 3 44 58
  5. Myelin transcription factor 1 (Myt1) expression in demyelinated lesions of rodent and human CNS. (PMID: 17330875) Vana AC … Armstrong RC (Glia 2007) 3 22 58

Products for MYT1 Gene

Sources for MYT1 Gene

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