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Aliases for RNU2-2P Gene

Subcategory (RNA class) for RNU2-2P Gene

snRNA

Aliases for RNU2-2P Gene

  • RNA, U2 Small Nuclear 2, Pseudogene 2 3 5
  • RNA, U2B Small Nuclear 2 3
  • RNA, U2 Small Nuclear 2 2
  • RNU2-2 3
  • RNU2B 3
  • U2 3

External Ids for RNU2-2P Gene

ORGUL Members for RNU2-2P Gene

Previous HGNC Symbols for RNU2-2P Gene

  • RNU2B
  • RNU2-2

Previous GeneCards Identifiers for RNU2-2P Gene

  • GC11M062612

Summaries for RNU2-2P Gene

GeneCards Summary for RNU2-2P Gene

RNU2-2P (RNA, U2 Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-2P Gene

Genomics for RNU2-2P Gene

GeneHancer (GH) Regulatory Elements for RNU2-2P Gene

Promoters and enhancers for RNU2-2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062838 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 650.7 +1.0 963 4.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 WDR74 RNU2-2P GC11M062842 NXF1 CSKMT INTS5 SNHG1 UBXN1 MTA2 GANAB
GH11J062851 Enhancer 1.1 Ensembl ENCODE 0.4 -10.0 -10048 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT TCF12 POLR2B E2F8 PAF1 REST SNORD31 SNORD30 SNORD22 GC11M062936 GC11M062933 GC11M062932 SNHG1 NXF1 UBXN1 CSKMT
GH11J062850 Enhancer 0.8 Ensembl ENCODE 0.4 -8.8 -8792 0.4 SCRT1 CTCF PHF21A PRDM6 POLR2A MYNN SCRT2 TARDBP PRDM10 KDM1A SNORD22 GC11M062936 RNU2-2P WDR74 GC11M062842
GH11J062853 Enhancer 0.4 ENCODE 0.4 -8.4 -8355 0.1 PRDM6 POLR2A SNORD22 GC11M062936 WDR74 GC11M062842 RNU2-2P
GH11J062837 Enhancer 0.2 Ensembl 0.7 +3.9 3908 0.2 GC11M062842 RNU2-2P WDR74 TEX54
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-2P Gene

Genomic Locations for RNU2-2P Gene
chr11:62,841,619-62,841,809
(GRCh38/hg38)
Size:
191 bases
Orientation:
Minus strand
chr11:62,609,091-62,609,281
(GRCh37/hg19)
Size:
191 bases
Orientation:
Minus strand

Genomic View for RNU2-2P Gene

Genes around RNU2-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-2P Gene

Function for RNU2-2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-2P Gene

Localization for RNU2-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-2P Gene

Pathways & Interactions for RNU2-2P Gene

SuperPathways for RNU2-2P Gene

No Data Available

Interacting Proteins for RNU2-2P Gene

Gene Ontology (GO) - Biological Process for RNU2-2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-2P Gene

Drugs & Compounds for RNU2-2P Gene

No Compound Related Data Available

Transcripts for RNU2-2P Gene

mRNA/cDNA for RNU2-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-2P Gene

No ASD Table

Relevant External Links for RNU2-2P Gene

GeneLoc Exon Structure for
RNU2-2P
ECgene alternative splicing isoforms for
RNU2-2P

Expression for RNU2-2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-2P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-2P Gene

This gene is overexpressed in Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with RNU2-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-2P Gene

Orthologs for RNU2-2P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-2P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm23444 34
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U2 34
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 34
  • 96 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34 34 34 34 34
  • 96 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 34
  • 91 (a)
OneToOne
Species where no ortholog for RNU2-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-2P Gene

ENSEMBL:
Gene Tree for RNU2-2P (if available)
TreeFam:
Gene Tree for RNU2-2P (if available)

Paralogs for RNU2-2P Gene

No data available for Paralogs for RNU2-2P Gene

Variants for RNU2-2P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU2-2P Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for RNU2-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU2-2P Gene

Disorders for RNU2-2P Gene

Additional Disease Information for RNU2-2P

No disorders were found for RNU2-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU2-2P Gene

Publications for RNU2-2P Gene

  1. Mg2+ induces a sharp and reversible transition in U1 and U2 small nuclear ribonucleoprotein configurations. (PMID: 6238232) Reveillaud I … Jeanteur P (Molecular and cellular biology 1984) 2 3 58

Products for RNU2-2P Gene

Sources for RNU2-2P Gene

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