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Aliases for SPATS2L Gene

Aliases for SPATS2L Gene

  • Spermatogenesis Associated Serine Rich 2 Like 2 3 5
  • Stress Granule And Nucleolar Protein 2 3 4
  • DNA Polymerase-Transactivated Protein 6 3 4
  • DNAPTP6 3 4
  • SGNP 3 4
  • Spermatogenesis Associated, Serine-Rich 2-Like 2
  • DNA Polymerase Transactivated Protein 6 2
  • SPATS2-Like Protein 3

External Ids for SPATS2L Gene

Previous GeneCards Identifiers for SPATS2L Gene

  • GC02P200881
  • GC02P201170
  • GC02P193023

Summaries for SPATS2L Gene

GeneCards Summary for SPATS2L Gene

SPATS2L (Spermatogenesis Associated Serine Rich 2 Like) is a Protein Coding gene. An important paralog of this gene is SPATS2.

Gene Wiki entry for SPATS2L Gene

Additional gene information for SPATS2L Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATS2L Gene

Genomics for SPATS2L Gene

GeneHancer (GH) Regulatory Elements for SPATS2L Gene

Promoters and enhancers for SPATS2L Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J200304 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 660.4 +2.3 2323 7.7 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SPATS2L ORC2 RNU6-312P TYW5 RNU6-762P CLK1 LOC101927687 GC02P200374
GH02J200372 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 668 +72.7 72705 12 PKNOX1 ZFP64 FEZF1 ETS1 YY1 ZNF143 ATF7 RUNX3 RXRA JUNB SPATS2L CFLAR C2orf69 LOC101927687 GC02P200374 RNY4P34 LOC101927741
GH02J200402 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.8 +100.7 100652 8.2 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 FOS SP5 JUNB SPATS2L FTCDNL1 AOX3P CLK1 BZW1 RNY4P34 LOC101927741
GH02J201070 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 +765.9 765941 2.8 CLOCK ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 NDUFB3 FAM126B ORC2 CLK1 CDK15 KCTD18 RNU6-762P CFLAR-AS1 ENSG00000273209 SPATS2L
GH02J199953 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 -350.5 -350506 3.3 CLOCK ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC TYW5 MAIP1 LOC101927687 CLK1 KCTD18 RNU6-762P SPATS2L RNU6-312P FTCDNL1 C2orf69
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SPATS2L on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPATS2L Gene

Genomic Locations for SPATS2L Gene
176,383 bases
Plus strand
176,383 bases
Plus strand

Genomic View for SPATS2L Gene

Genes around SPATS2L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATS2L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATS2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATS2L Gene

Proteins for SPATS2L Gene

  • Protein details for SPATS2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    SPATS2-like protein
    Protein Accession:
    Secondary Accessions:
    • A8K381
    • B4DRE6
    • B4DT67
    • B7WNZ7
    • Q53T22
    • Q8WV53
    • Q8WYG1
    • Q9NTW4

    Protein attributes for SPATS2L Gene

    558 amino acids
    Molecular mass:
    61729 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAG22487.1; Type=Frameshift; Positions=92; Evidence={ECO:0000305};

    Alternative splice isoforms for SPATS2L Gene


neXtProt entry for SPATS2L Gene

Post-translational modifications for SPATS2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SPATS2L Gene

Domains & Families for SPATS2L Gene

Gene Families for SPATS2L Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for SPATS2L Gene


Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SPATS2 family.
  • Belongs to the SPATS2 family.
genes like me logo Genes that share domains with SPATS2L: view

Function for SPATS2L Gene

Phenotypes From GWAS Catalog for SPATS2L Gene

Gene Ontology (GO) - Molecular Function for SPATS2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding HDA 22658674
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with SPATS2L: view
genes like me logo Genes that share phenotypes with SPATS2L: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SPATS2L

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SPATS2L Gene

Localization for SPATS2L Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATS2L Gene

Cytoplasm. Nucleus, nucleolus. Note=During oxidative stress as well as UV irradiation, energy deprivation or heat shock, relocalizes to cytoplasmic stress granules. In the nucleus, found in structures lacking NPM1.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPATS2L gene
Compartment Confidence
nucleus 5
cytosol 5
cytoskeleton 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (4)
  • Nucleoli (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SPATS2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA,IEA --
GO:0005737 cytoplasm IBA,IEA --
GO:0005829 cytosol IDA --
GO:0032991 protein-containing complex IDA --
genes like me logo Genes that share ontologies with SPATS2L: view

Pathways & Interactions for SPATS2L Gene

SuperPathways for SPATS2L Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPATS2L Gene


No data available for Pathways by source and SIGNOR curated interactions for SPATS2L Gene

Drugs & Compounds for SPATS2L Gene

No Compound Related Data Available

Transcripts for SPATS2L Gene

Unigene Clusters for SPATS2L Gene

Spermatogenesis associated, serine-rich 2-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SPATS2L

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATS2L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b
SP1: -
SP2: - -

Relevant External Links for SPATS2L Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPATS2L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATS2L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SPATS2L Gene

This gene is overexpressed in Lung (62.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SPATS2L Gene

NURSA nuclear receptor signaling pathways regulating expression of SPATS2L Gene:


SOURCE GeneReport for Unigene cluster for SPATS2L Gene:


Evidence on tissue expression from TISSUES for SPATS2L Gene

  • Nervous system(4.9)
  • Liver(4.3)
  • Eye(4.1)
  • Intestine(3)
  • Lung(2.9)
  • Kidney(2.5)
genes like me logo Genes that share expression patterns with SPATS2L: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATS2L Gene

Orthologs for SPATS2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATS2L Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SPATS2L 34 33
  • 99.88 (n)
(Canis familiaris)
Mammalia SPATS2L 34 33
  • 91.76 (n)
(Bos Taurus)
Mammalia SPATS2L 34 33
  • 90.72 (n)
(Rattus norvegicus)
Mammalia Spats2l 33
  • 87.97 (n)
(Mus musculus)
Mammalia Spats2l 16 34 33
  • 87.96 (n)
(Monodelphis domestica)
Mammalia SPATS2L 34
  • 77 (a)
(Ornithorhynchus anatinus)
Mammalia SPATS2L 34
  • 51 (a)
(Gallus gallus)
Aves SPATS2L 34 33
  • 72.59 (n)
(Anolis carolinensis)
Reptilia SPATS2L 34
  • 60 (a)
Species where no ortholog for SPATS2L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATS2L Gene

Gene Tree for SPATS2L (if available)
Gene Tree for SPATS2L (if available)
Evolutionary constrained regions (ECRs) for SPATS2L: view image

Paralogs for SPATS2L Gene

Paralogs for SPATS2L Gene

(65) SIMAP similar genes for SPATS2L Gene using alignment to 16 proteins:

  • B4DT67_HUMAN
  • C9J8M7_HUMAN
  • C9JW67_HUMAN
  • F2Z2S1_HUMAN
  • F8VT91_HUMAN
  • F8VZ02_HUMAN
  • F8W6C2_HUMAN
  • H7C2G5_HUMAN
  • L8E8P7_HUMAN
genes like me logo Genes that share paralogs with SPATS2L: view

Variants for SPATS2L Gene

Sequence variations from dbSNP and Humsavar for SPATS2L Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000001328 -- 200,475,451(+) G/A intron_variant
rs1000012982 -- 200,439,880(+) A/G intron_variant
rs1000018079 -- 200,452,172(+) TTT/TTTT intron_variant
rs1000055925 -- 200,359,800(+) T/G genic_upstream_transcript_variant, intron_variant
rs1000083435 -- 200,352,062(+) A/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SPATS2L Gene

Variant ID Type Subtype PubMed ID
esv1009509 CNV insertion 20482838
esv2658982 CNV deletion 23128226
esv2677584 CNV deletion 23128226
esv2763058 CNV loss 21179565
esv2763627 CNV loss 21179565
esv3332672 CNV insertion 20981092
esv3349715 CNV insertion 20981092
esv3448478 CNV insertion 20981092
esv3593955 CNV loss 21293372
esv3593957 CNV loss 21293372
esv3893530 CNV loss 25118596
nsv1072060 CNV deletion 25765185
nsv1118890 CNV deletion 24896259
nsv213509 CNV insertion 16902084
nsv3107 CNV deletion 18451855
nsv3108 CNV deletion 18451855
nsv507061 OTHER sequence alteration 20534489
nsv517769 CNV gain+loss 19592680
nsv819248 CNV gain 19587683

Variation tolerance for SPATS2L Gene

Residual Variation Intolerance Score: 35.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.85; 83.60% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SPATS2L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPATS2L Gene

Disorders for SPATS2L Gene

Additional Disease Information for SPATS2L

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SPATS2L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATS2L Gene

Publications for SPATS2L Gene

  1. SGNP: an essential Stress Granule/Nucleolar Protein potentially involved in 5.8s rRNA processing/transport. (PMID: 19005571) Zhu CH … Wright WE (PloS one 2008) 2 3 4 58
  2. Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene. (PMID: 22792082) Himes BE … Weiss ST (PLoS genetics 2012) 2 3 58
  3. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 44 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  5. Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S … Poustka A (Genome research 2001) 3 4 58

Products for SPATS2L Gene

Sources for SPATS2L Gene

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