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Aliases for RPL36 Gene

Aliases for RPL36 Gene

  • Ribosomal Protein L36 2 3 5
  • Large Ribosomal Subunit Protein EL36 3 4
  • 60S Ribosomal Protein L36 3
  • L36 3

External Ids for RPL36 Gene

Previous GeneCards Identifiers for RPL36 Gene

  • GC19P005782
  • GC19P005621
  • GC19P005641
  • GC19P005451

Summaries for RPL36 Gene

Entrez Gene Summary for RPL36 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L36E family of ribosomal proteins. It is located in the cytoplasm. Transcript variants derived from alternative splicing exist; they encode the same protein. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL36 Gene

RPL36 (Ribosomal Protein L36) is a Protein Coding gene. Diseases associated with RPL36 include Retinitis Pigmentosa 36 and Retinitis Pigmentosa 59. Among its related pathways are Viral mRNA Translation and Influenza Viral RNA Transcription and Replication. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.

UniProtKB/Swiss-Prot for RPL36 Gene

  • Component of the large ribosomal subunit.

Gene Wiki entry for RPL36 Gene

Additional gene information for RPL36 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36 Gene

Genomics for RPL36 Gene

GeneHancer (GH) Regulatory Elements for RPL36 Gene

Promoters and enhancers for RPL36 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I005689 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 583.7 +17.2 17155 5 ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 ZC3H11A RPL36 DUS3L KHSRP ENSG00000267571 SAFB SNRPEP4 VMAC SAFB2 PTPRS KDM4B
GH19I005674 Enhancer 0.5 ENCODE 569.2 +1.5 1526 3 PKNOX1 POLR2A ZBTB48 ZSCAN16 ZBTB33 ZIC2 RPL36 HSD11B1L
GH19I005620 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.2 -51.6 -51559 6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B SAFB2 SAFB RPL36 KHSRP DUS3L KDM4B DPP9-AS1 HSD11B1L C19orf70 GTF2F1
GH19I005717 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20 +44.3 44308 4.4 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 LONP1 CATSPERD DUS3L ENSG00000267571 SAFB KHSRP KDM4B RANBP3 RPL36 PTPRS
GH19I006527 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.7 +855.7 855697 6.2 YBX1 IRF4 E2F8 ZNF143 ZNF548 MCM3 SP3 MEF2D ZNF610 GLIS1 TNFSF9 ZNF557 KHSRP DUS3L SAFB2 SAFB SNRPEP4 ENSG00000267571 GTF2F1 RANBP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL36 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL36 gene promoter:

Genomic Locations for RPL36 Gene

Genomic Locations for RPL36 Gene
chr19:5,674,947-5,691,876
(GRCh38/hg38)
Size:
16,930 bases
Orientation:
Plus strand
chr19:5,674,958-5,691,887
(GRCh37/hg19)

Genomic View for RPL36 Gene

Genes around RPL36 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36 Gene

Proteins for RPL36 Gene

  • Protein details for RPL36 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3U8-RL36_HUMAN
    Recommended name:
    60S ribosomal protein L36
    Protein Accession:
    Q9Y3U8
    Secondary Accessions:
    • B2R4Y1
    • D6W634
    • Q6FIG1
    • Q9UQF6

    Protein attributes for RPL36 Gene

    Size:
    105 amino acids
    Molecular mass:
    12254 Da
    Quaternary structure:
    • Component of the large ribosomal subunit.

    Three dimensional structures from OCA and Proteopedia for RPL36 Gene

neXtProt entry for RPL36 Gene

Post-translational modifications for RPL36 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPL36 Gene

No data available for DME Specific Peptides for RPL36 Gene

Domains & Families for RPL36 Gene

Gene Families for RPL36 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Ribosomal proteins

Protein Domains for RPL36 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RPL36 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y3U8

UniProtKB/Swiss-Prot:

RL36_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eL36 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eL36 family.
genes like me logo Genes that share domains with RPL36: view

Function for RPL36 Gene

Molecular function for RPL36 Gene

UniProtKB/Swiss-Prot Function:
Component of the large ribosomal subunit.

Gene Ontology (GO) - Molecular Function for RPL36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IBA --
GO:0003735 structural constituent of ribosome IBA,NAS 12962325
genes like me logo Genes that share ontologies with RPL36: view
genes like me logo Genes that share phenotypes with RPL36: view

Animal Model Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL36 Gene

Localization for RPL36 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPL36 gene
Compartment Confidence
nucleus 5
cytosol 5
mitochondrion 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (1)
  • Endoplasmic reticulum (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RPL36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm HDA,IDA 16791210
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with RPL36: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL36 Gene

Pathways & Interactions for RPL36 Gene

genes like me logo Genes that share pathways with RPL36: view

Pathways by source for RPL36 Gene

1 KEGG pathway for RPL36 Gene
1 GeneGo (Thomson Reuters) pathway for RPL36 Gene

Gene Ontology (GO) - Biological Process for RPL36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0002181 cytoplasmic translation IBA --
GO:0006364 rRNA processing TAS --
GO:0006412 translation NAS,IEA 12962325
GO:0006413 translational initiation TAS --
genes like me logo Genes that share ontologies with RPL36: view

No data available for SIGNOR curated interactions for RPL36 Gene

Drugs & Compounds for RPL36 Gene

No Compound Related Data Available

Transcripts for RPL36 Gene

Unigene Clusters for RPL36 Gene

Ribosomal protein L36:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b
SP1:
SP2:

Relevant External Links for RPL36 Gene

GeneLoc Exon Structure for
RPL36
ECgene alternative splicing isoforms for
RPL36

Expression for RPL36 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL36 Gene

Protein differential expression in normal tissues from HIPED for RPL36 Gene

This gene is overexpressed in Nasal epithelium (18.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RPL36 Gene



Protein tissue co-expression partners for RPL36 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL36 Gene:

RPL36

SOURCE GeneReport for Unigene cluster for RPL36 Gene:

Hs.408018

Evidence on tissue expression from TISSUES for RPL36 Gene

  • Skin(4.5)
  • Kidney(4.4)
  • Blood(4.3)
  • Nervous system(4)
  • Liver(3.4)
  • Adrenal gland(2.6)
  • Bone marrow(2.5)
  • Lymph node(2.5)
  • Muscle(2.5)
  • Pancreas(2.5)
  • Spleen(2.5)
  • Intestine(2.4)
  • Stomach(2.4)
  • Gall bladder(2.2)
  • Lung(2.2)
  • Heart(2.1)
  • Thyroid gland(2.1)
genes like me logo Genes that share expression patterns with RPL36: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36 Gene

Orthologs for RPL36 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL36 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL36 34 33
  • 99.37 (n)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 98 (a)
OneToMany
-- 34
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpl36-ps3 34
  • 98 (a)
OneToOne
Gm4604 33
  • 86.98 (n)
Rpl36-ps12 16
platypus
(Ornithorhynchus anatinus)
Mammalia RPL36 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 34
  • 92 (a)
OneToMany
RPL36 34 33
  • 90.16 (n)
OneToMany
-- 34
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RPL36 34 33
  • 91.84 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl36 33
  • 86.67 (n)
chicken
(Gallus gallus)
Aves RPL36 34
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.8714 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.29254 33
zebrafish
(Danio rerio)
Actinopterygii rpl36 34
  • 92 (a)
OneToOne
Dr.1335 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8943 33
fruit fly
(Drosophila melanogaster)
Insecta RpL36 34 35
  • 60 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea rpl-36 34
  • 57 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL36B 36 34
  • 46 (a)
RPL36A 34
  • 45 (a)
OneToMany
soybean
(Glycine max)
eudicotyledons Gma.1156 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4420 34
  • 73 (a)
OneToOne
Species where no ortholog for RPL36 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL36 Gene

ENSEMBL:
Gene Tree for RPL36 (if available)
TreeFam:
Gene Tree for RPL36 (if available)

Paralogs for RPL36 Gene

No data available for Paralogs for RPL36 Gene

Variants for RPL36 Gene

Sequence variations from dbSNP and Humsavar for RPL36 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001159971 -- 5,691,638(+) C/T 3_prime_UTR_variant
rs1002071399 -- 5,689,016(+) T/C upstream_transcript_variant
rs1002103875 -- 5,689,343(+) C/A upstream_transcript_variant
rs1002413035 -- 5,690,868(+) C/T intron_variant
rs1002730634 -- 5,689,746(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL36 Gene

Variant ID Type Subtype PubMed ID
nsv1062851 CNV gain 25217958
nsv953952 CNV deletion 24416366

Variation tolerance for RPL36 Gene

Residual Variation Intolerance Score: 56.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.17; 3.80% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RPL36 Gene

Human Gene Mutation Database (HGMD)
RPL36
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL36 Gene

Disorders for RPL36 Gene

MalaCards: The human disease database

(3) MalaCards diseases for RPL36 Gene - From: HGMD, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
retinitis pigmentosa 36
  • rp36
retinitis pigmentosa 59
  • rp59
diamond-blackfan anemia
  • blackfan - diamond syndrome
- elite association - COSMIC cancer census association via MalaCards
Search RPL36 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for RPL36

genes like me logo Genes that share disorders with RPL36: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPL36 Gene

Publications for RPL36 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. (PMID: 12962325) Odintsova TI … Karpova GG (Journal of protein chemistry 2003) 3 4 58
  3. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 4 58
  4. Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S … Poustka A (Genome research 2001) 3 4 58
  5. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 3 4 58

Products for RPL36 Gene

Sources for RPL36 Gene

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