Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SEZ6L Gene

Aliases for SEZ6L Gene

  • Seizure Related 6 Homolog Like 2 3 5
  • Seizure Related Gene 6 (Mouse)-Like 2
  • Seizure Related Gene 6-Like 3
  • Seizure 6-Like Protein 3
  • KIAA0927 4

External Ids for SEZ6L Gene

Previous GeneCards Identifiers for SEZ6L Gene

  • GC22P023261
  • GC22P023384
  • GC22P024890
  • GC22P024889
  • GC22P026565
  • GC22P009512

Summaries for SEZ6L Gene

GeneCards Summary for SEZ6L Gene

SEZ6L (Seizure Related 6 Homolog Like) is a Protein Coding gene. An important paralog of this gene is SEZ6.

UniProtKB/Swiss-Prot for SEZ6L Gene

  • May contribute to specialized endoplasmic reticulum functions in neurons.

Gene Wiki entry for SEZ6L Gene

Additional gene information for SEZ6L Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEZ6L Gene

Genomics for SEZ6L Gene

GeneHancer (GH) Regulatory Elements for SEZ6L Gene

Promoters and enhancers for SEZ6L Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J026169 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 650.7 +0.0 27 0.6 MXI1 POLR2A SUZ12 REST ZIC2 ZBTB26 EZH2 SEZ6L LOC105372971 LOC105372974
GH22J026168 Enhancer 0.4 ENCODE 650.7 -0.7 -694 0.1 SP1 ZSCAN5C LOC105372971 SEZ6L LOC102724801
GH22J026294 Enhancer 1 Ensembl ENCODE 10.2 +125.3 125313 1.3 HDGF PKNOX1 ZSCAN4 ZNF266 EBF1 YBX1 BATF IRF4 E4F1 FOXK2 LOC100507599 MIATNB RPL15P22 SEZ6L LOC105372974 RNA5SP495
GH22J026196 Enhancer 0.8 ENCODE 11.6 +27.4 27376 0.2 ELF3 PKNOX1 FOXA2 RARA ETS1 SCRT2 CREM CEBPB MIER2 KAT8 SEZ6L LOC105372971 LINC02559 LOC105372974
GH22J026360 Enhancer 0.9 Ensembl ENCODE 10.1 +191.1 191127 0.8 CTCF ATF1 RB1 SIN3A RAD21 E2F1 GLIS2 POLR2A SMC3 ZNF143 SEZ6L RNA5SP495 LOC105372974
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEZ6L on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SEZ6L gene promoter:
  • p53
  • YY1
  • SRF (504 AA)
  • SRF
  • FOXD3
  • ER-alpha
  • GATA-1
  • GATA-2
  • GATA-3
  • POU2F1

Genomic Locations for SEZ6L Gene

Genomic Locations for SEZ6L Gene
214,124 bases
Plus strand
214,124 bases
Plus strand

Genomic View for SEZ6L Gene

Genes around SEZ6L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEZ6L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEZ6L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEZ6L Gene

Proteins for SEZ6L Gene

  • Protein details for SEZ6L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Seizure 6-like protein
    Protein Accession:
    Secondary Accessions:
    • A0AUW7
    • B0QYG4
    • B0QYG5
    • B7ZLJ6
    • G8JLP3
    • O95917
    • Q5THY5
    • Q6IBZ4
    • Q6UXD4
    • Q9NUI3
    • Q9NUI4
    • Q9NUI5
    • Q9Y2E1
    • Q9Y3J6

    Protein attributes for SEZ6L Gene

    1024 amino acids
    Molecular mass:
    111782 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAA76771.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SEZ6L Gene

    Alternative splice isoforms for SEZ6L Gene

neXtProt entry for SEZ6L Gene

Post-translational modifications for SEZ6L Gene

  • O-glycosylated.
  • Glycosylation at isoforms=2, 3, 4, 5, 6, 7742, posLast=674674, isoforms=2, 3, 4, 5, 6, 7618, isoforms=2, 3, 4, 5, 6, 7576, posLast=514514, posLast=474474, isoforms=2, 3, 4, 5, 6, 7458, isoforms=2, 3, 4, 5, 6, 7435, isoforms=2, 3, 4, 5, 6, 7350, posLast=328328, posLast=311311, and isoforms=4, 5, 6, 749
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for SEZ6L Gene

Domains & Families for SEZ6L Gene

Gene Families for SEZ6L Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SEZ6 family.
  • Belongs to the SEZ6 family.
genes like me logo Genes that share domains with SEZ6L: view

Function for SEZ6L Gene

Molecular function for SEZ6L Gene

UniProtKB/Swiss-Prot Function:
May contribute to specialized endoplasmic reticulum functions in neurons.
GENATLAS Biochemistry:
seizure related gene 6 (mouse)-like

Phenotypes From GWAS Catalog for SEZ6L Gene

genes like me logo Genes that share phenotypes with SEZ6L: view

Animal Models for SEZ6L Gene

MGI Knock Outs for SEZ6L:
  • Sez6l Sez6l<tm1b(EUCOMM)Hmgu>
  • Sez6l Sez6l<tm1Hta>

Animal Model Products

  • Taconic Biosciences Mouse Models for SEZ6L

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SEZ6L Gene

Localization for SEZ6L Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEZ6L Gene

Endoplasmic reticulum membrane; Single-pass type I membrane protein.

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SEZ6L gene
Compartment Confidence
endoplasmic reticulum 4
plasma membrane 3
extracellular 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for SEZ6L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0043025 neuronal cell body IEA --
genes like me logo Genes that share ontologies with SEZ6L: view

Pathways & Interactions for SEZ6L Gene

SuperPathways for SEZ6L Gene

No Data Available

Interacting Proteins for SEZ6L Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: Q9BYH1-SE6L1_HUMAN ENSP00000248933 for SEZ6L Gene via IID STRING

Gene Ontology (GO) - Biological Process for SEZ6L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008344 adult locomotory behavior IEA --
GO:0021680 cerebellar Purkinje cell layer development IEA --
GO:0060074 synapse maturation IEA --
GO:0090036 regulation of protein kinase C signaling IEA --
genes like me logo Genes that share ontologies with SEZ6L: view

No data available for Pathways by source and SIGNOR curated interactions for SEZ6L Gene

Drugs & Compounds for SEZ6L Gene

No Compound Related Data Available

Transcripts for SEZ6L Gene

Unigene Clusters for SEZ6L Gene

Seizure related 6 homolog (mouse)-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEZ6L Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b · 17c ^
SP1: - - -
SP2: - - -
SP3: - -
SP4: - - - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - -
SP8: -

ExUns: 18a · 18b · 18c · 18d

Relevant External Links for SEZ6L Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SEZ6L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEZ6L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SEZ6L Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x6.8), Brain - Hippocampus (x6.4), Brain - Hypothalamus (x6.3), Brain - Frontal Cortex (BA9) (x6.2), Brain - Cerebellar Hemisphere (x4.6), Brain - Cortex (x4.6), and Brain - Amygdala (x4.2).

Protein differential expression in normal tissues from HIPED for SEZ6L Gene

This gene is overexpressed in Cerebrospinal fluid (52.1) and Vitreous humor (10.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SEZ6L Gene

Protein tissue co-expression partners for SEZ6L Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SEZ6L Gene:


SOURCE GeneReport for Unigene cluster for SEZ6L Gene:


mRNA Expression by UniProt/SwissProt for SEZ6L Gene:

Tissue specificity: Widely expressed, including adult and fetal brains and lungs. Not expressed in all lung cancer cell lines.

Evidence on tissue expression from TISSUES for SEZ6L Gene

  • Nervous system(4.7)
genes like me logo Genes that share expression patterns with SEZ6L: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for SEZ6L Gene

Orthologs for SEZ6L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SEZ6L Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SEZ6L 34 33
  • 94.9 (n)
(Canis familiaris)
Mammalia SEZ6L 34 33
  • 88.19 (n)
(Bos Taurus)
Mammalia SEZ6L 34 33
  • 86.06 (n)
(Monodelphis domestica)
Mammalia SEZ6L 34
  • 83 (a)
(Rattus norvegicus)
Mammalia Sez6l 33
  • 81.76 (n)
(Mus musculus)
Mammalia Sez6l 16 34 33
  • 81.5 (n)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 29 (a)
(Gallus gallus)
Aves SEZ6L 34 33
  • 77.53 (n)
(Anolis carolinensis)
Reptilia -- 34
  • 26 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia sez6l 33
  • 69.33 (n)
(Danio rerio)
Actinopterygii LOC100331987 33
  • 68.28 (n)
sez6l 34
  • 58 (a)
Species where no ortholog for SEZ6L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SEZ6L Gene

Gene Tree for SEZ6L (if available)
Gene Tree for SEZ6L (if available)
Evolutionary constrained regions (ECRs) for SEZ6L: view image

Paralogs for SEZ6L Gene

Paralogs for SEZ6L Gene

(3) SIMAP similar genes for SEZ6L Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SEZ6L: view

Variants for SEZ6L Gene

Sequence variations from dbSNP and Humsavar for SEZ6L Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs193920876 uncertain-significance, Malignant tumor of prostate 26,293,089(+) G/T coding_sequence_variant, stop_gained
rs193920909 uncertain-significance, Malignant tumor of prostate 26,310,665(+) G/A intron_variant
rs1000000479 -- 26,309,904(+) A/G intron_variant
rs1000024155 -- 26,295,911(+) A/G intron_variant
rs1000079757 -- 26,280,915(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SEZ6L Gene

Variant ID Type Subtype PubMed ID
dgv1308e212 CNV loss 25503493
esv1931124 CNV deletion 18987734
esv3410779 CNV insertion 20981092
esv3558008 CNV deletion 23714750
esv3558012 CNV deletion 23714750
esv3568324 CNV loss 25503493
esv3568325 CNV loss 25503493
esv3568327 CNV loss 25503493
nsv1136664 CNV deletion 24896259
nsv3582 CNV insertion 18451855
nsv3583 CNV deletion 18451855
nsv469709 CNV loss 16826518
nsv7350 OTHER inversion 18451855
nsv829136 CNV loss 20364138
nsv829137 CNV loss 20364138
nsv834165 CNV gain+loss 17160897
nsv953064 CNV deletion 24416366

Variation tolerance for SEZ6L Gene

Residual Variation Intolerance Score: 34.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.78; 79.02% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SEZ6L Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SEZ6L Gene

Disorders for SEZ6L Gene

Additional Disease Information for SEZ6L

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SEZ6L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEZ6L Gene

Publications for SEZ6L Gene

  1. Seizure 6-like (SEZ6L) gene and risk for lung cancer. (PMID: 17804757) Gorlov IP … Amos CI (Cancer research 2007) 3 22 44 58
  2. Identification of a 428-kb homozygously deleted region disrupting the SEZ6L gene at 22q12.1 in a lung cancer cell line. (PMID: 11175339) Nishioka M … Yokota J (Oncogene 2000) 3 4 22 58
  3. Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study. (PMID: 21901158) Irvin MR … Arnett DK (PloS one 2011) 3 44 58
  4. Genetic variants identified in a European genome-wide association study that were found to predict incident coronary heart disease in the atherosclerosis risk in communities study. (PMID: 19955471) Bressler J … Boerwinkle E (American journal of epidemiology 2010) 3 44 58
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58

Products for SEZ6L Gene

Sources for SEZ6L Gene

Loading form....