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Aliases for COPG1 Gene

Aliases for COPG1 Gene

  • Coatomer Protein Complex Subunit Gamma 1 2 3 5
  • Coatomer Protein Complex, Subunit Gamma 2 3
  • Coat Protein Gamma-Cop 2 3
  • Gamma-1-Coat Protein 3 4
  • Gamma-1-COP 3 4
  • COPG 3 4
  • Coatomer Protein Complex, Subunit Gamma 1 2
  • Coatomer Subunit Gamma-1 3
  • Coatomer Subunit Gamma 3
  • Gamma-Coat Protein 3
  • Gamma-COP 3

External Ids for COPG1 Gene

Previous HGNC Symbols for COPG1 Gene

  • COPG

Previous GeneCards Identifiers for COPG1 Gene

  • GC03P128969
  • GC03P128970
  • GC03P129056

Summaries for COPG1 Gene

GeneCards Summary for COPG1 Gene

COPG1 (Coatomer Protein Complex Subunit Gamma 1) is a Protein Coding gene. Among its related pathways are Transport to the Golgi and subsequent modification and Metabolism of proteins. Gene Ontology (GO) annotations related to this gene include binding and structural molecule activity. An important paralog of this gene is COPG2.

UniProtKB/Swiss-Prot for COPG1 Gene

  • The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis (By similarity).

Gene Wiki entry for COPG1 Gene

Additional gene information for COPG1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COPG1 Gene

Genomics for COPG1 Gene

GeneHancer (GH) Regulatory Elements for COPG1 Gene

Promoters and enhancers for COPG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I129248 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.0 12 2.6 HDGF ATF1 FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 COPG1 PIR44075 HMCES CNBP ISY1 RAB43 GP9 H1FX-AS1 MBD4 MIR6826
GH03I129178 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.4 -67.0 -67031 8.4 PKNOX1 SMAD1 FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 CNBP LOC105374101 ENSG00000244932 RPL32P3 ISY1 MBD4 RPS15AP16 H1FX H1FX-AS1 COPG1
GH03I129428 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 12.2 +179.5 179463 1.8 CLOCK ATF1 ARID4B SIN3A DMAP1 YY1 POLR2B FOS SP3 SP5 EFCAB12 ENSG00000244932 RPL32P3 ISY1 H1FX MBD4 COPG1 RPS15AP16 IFT122
GH03I128877 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 -370.0 -370023 3.6 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ACAD9 PIR50406 ENSG00000244932 RPL32P3 ISY1 H1FX LOC653712 H1FX-AS1 MBD4 RPS15AP16
GH03I129277 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 +29.6 29619 3.1 HDGF PKNOX1 ATF1 SMAD1 ARID4B SIN3A BRCA1 ZNF48 YY1 ZNF121 HMCES ISY1 MBD4 ENSG00000244932 RPL32P3 H1FX RPS15AP16 CNBP COPG1 RPN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around COPG1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for COPG1 Gene

Genomic Locations for COPG1 Gene
chr3:129,249,575-129,277,773
(GRCh38/hg38)
Size:
28,199 bases
Orientation:
Plus strand
chr3:128,968,449-128,996,616
(GRCh37/hg19)

Genomic View for COPG1 Gene

Genes around COPG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
COPG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for COPG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COPG1 Gene

Proteins for COPG1 Gene

  • Protein details for COPG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y678-COPG1_HUMAN
    Recommended name:
    Coatomer subunit gamma-1
    Protein Accession:
    Q9Y678
    Secondary Accessions:
    • A8K6M8
    • B3KMF6
    • Q54AC4

    Protein attributes for COPG1 Gene

    Size:
    874 amino acids
    Molecular mass:
    97718 Da
    Quaternary structure:
    • Oligomeric complex that consists of at least the alpha, beta, beta, gamma, delta, epsilon and zeta subunits. Interacts with ZNF289/ARFGAP2 through its C-terminal appendage domain. Interacts with EGFR upon EGF treatment; interaction is essential for regulation of EGF-dependent nuclear transport of EGFR by retrograde trafficking from the Golgi to the ER. Interacts with COPB1. Interacts with TMED10 (via C-terminus). Interacts with TMED2, TMED3, TMED7 and TMED9.

    Three dimensional structures from OCA and Proteopedia for COPG1 Gene

neXtProt entry for COPG1 Gene

Post-translational modifications for COPG1 Gene

  • Ubiquitination at Lys514, Lys540, and Lys572
  • Modification sites at PhosphoSitePlus

Other Protein References for COPG1 Gene

No data available for DME Specific Peptides for COPG1 Gene

Domains & Families for COPG1 Gene

Gene Families for COPG1 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for COPG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y678

UniProtKB/Swiss-Prot:

COPG1_HUMAN :
  • Belongs to the COPG family.
Family:
  • Belongs to the COPG family.
genes like me logo Genes that share domains with COPG1: view

Function for COPG1 Gene

Molecular function for COPG1 Gene

UniProtKB/Swiss-Prot Function:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Required for limiting lipid storage in lipid droplets. Involved in lipid homeostasis by regulating the presence of perilipin family members PLIN2 and PLIN3 at the lipid droplet surface and promoting the association of adipocyte triglyceride lipase (PNPLA2) with the lipid droplet surface to mediate lipolysis (By similarity).

Phenotypes From GWAS Catalog for COPG1 Gene

Gene Ontology (GO) - Molecular Function for COPG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005198 structural molecule activity IEA --
GO:0005515 protein binding IPI 14527956
genes like me logo Genes that share ontologies with COPG1: view

Phenotypes for COPG1 Gene

MGI mutant phenotypes for COPG1:
inferred from 1 alleles
GenomeRNAi human phenotypes for COPG1:
genes like me logo Genes that share phenotypes with COPG1: view

Animal Models for COPG1 Gene

MGI Knock Outs for COPG1:

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for COPG1 Gene

Localization for COPG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COPG1 Gene

Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasmic vesicle, COPI-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Note=The coatomer is cytoplasmic or polymerized on the cytoplasmic side of the Golgi, as well as on the vesicles/buds originating from it. Predominantly located in the cis-Golgi apparatus. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for COPG1 gene
Compartment Confidence
cytosol 5
golgi apparatus 5
endoplasmic reticulum 4
nucleus 2
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (3)
  • Cytosol (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for COPG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane TAS --
GO:0005737 cytoplasm IEA --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0005794 Golgi apparatus IDA,IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with COPG1: view

Pathways & Interactions for COPG1 Gene

genes like me logo Genes that share pathways with COPG1: view

Gene Ontology (GO) - Biological Process for COPG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006886 intracellular protein transport IEA --
GO:0006888 ER to Golgi vesicle-mediated transport TAS --
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER TAS --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with COPG1: view

No data available for SIGNOR curated interactions for COPG1 Gene

Drugs & Compounds for COPG1 Gene

(2) Drugs for COPG1 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
S-(Dimethylarsenic)Cysteine Experimental Pharma Target 0
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with COPG1: view

Transcripts for COPG1 Gene

Unigene Clusters for COPG1 Gene

Coatomer protein complex, subunit gamma 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for COPG1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^
SP1: - - -
SP2:
SP3:
SP4:
SP5: -
SP6:

ExUns: 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25a · 25b
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for COPG1 Gene

GeneLoc Exon Structure for
COPG1
ECgene alternative splicing isoforms for
COPG1

Expression for COPG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for COPG1 Gene

Protein differential expression in normal tissues from HIPED for COPG1 Gene

This gene is overexpressed in Salivary gland (7.8) and Breast (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for COPG1 Gene



Protein tissue co-expression partners for COPG1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of COPG1 Gene:

COPG1

SOURCE GeneReport for Unigene cluster for COPG1 Gene:

Hs.518250

Evidence on tissue expression from TISSUES for COPG1 Gene

  • Nervous system(4.9)
  • Skin(4.6)
  • Liver(4.4)
  • Lung(3.1)
  • Intestine(2.6)
genes like me logo Genes that share expression patterns with COPG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for COPG1 Gene

Orthologs for COPG1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for COPG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COPG1 33 34
  • 99.54 (n)
oppossum
(Monodelphis domestica)
Mammalia COPG1 34
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COPG1 33 34
  • 92.6 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia COPG1 34
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Copg1 33
  • 89.32 (n)
mouse
(Mus musculus)
Mammalia Copg1 33 16 34
  • 89.17 (n)
cow
(Bos Taurus)
Mammalia COPG1 33 34
  • 88.63 (n)
chicken
(Gallus gallus)
Aves COPG 33 34
  • 82.07 (n)
lizard
(Anolis carolinensis)
Reptilia COPG1 34
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia copg1 33
  • 77.73 (n)
MGC76032 33
African clawed frog
(Xenopus laevis)
Amphibia MGC68533 33
zebrafish
(Danio rerio)
Actinopterygii copg2 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13885 33
fruit fly
(Drosophila melanogaster)
Insecta gammaCop 34
  • 59 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T14G10.5 34
  • 52 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SEC21 34 36
  • 29 (a)
OneToMany
rice
(Oryza sativa)
Liliopsida Os.7984 33
wheat
(Triticum aestivum)
Liliopsida Ta.14195 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.452 34
  • 72 (a)
ManyToMany
-- 34
  • 60 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4468 33
Species where no ortholog for COPG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for COPG1 Gene

ENSEMBL:
Gene Tree for COPG1 (if available)
TreeFam:
Gene Tree for COPG1 (if available)

Paralogs for COPG1 Gene

Paralogs for COPG1 Gene

(3) SIMAP similar genes for COPG1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with COPG1: view

Variants for COPG1 Gene

Sequence variations from dbSNP and Humsavar for COPG1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000047713 -- 129,252,550(+) T/G intron_variant
rs1000123664 -- 129,258,201(+) G/A intron_variant
rs1000190328 -- 129,274,666(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000268539 -- 129,270,084(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000410544 -- 129,258,449(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for COPG1 Gene

Variant ID Type Subtype PubMed ID
esv3383551 CNV duplication 20981092
nsv829722 CNV gain 17160897

Variation tolerance for COPG1 Gene

Residual Variation Intolerance Score: 14.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.10; 69.09% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for COPG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
COPG1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for COPG1 Gene

Disorders for COPG1 Gene

Additional Disease Information for COPG1

No disorders were found for COPG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for COPG1 Gene

Publications for COPG1 Gene

  1. Identification and characterization of novel isoforms of COP I subunits. (PMID: 11056392) Futatsumori M … Nakayama K (Journal of biochemistry 2000) 2 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Gamma-COP appendage domain - structure and function. (PMID: 14690497) Watson PJ … Owen DJ (Traffic (Copenhagen, Denmark) 2004) 3 4 58
  5. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu RM … Chen JL (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 4 58

Products for COPG1 Gene

Sources for COPG1 Gene

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