Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SEPT10 Gene

Aliases for SEPT10 Gene

  • Septin 10 2 3 5
  • Sept1-Like 2
  • Septin-10 3

External Ids for SEPT10 Gene

Previous GeneCards Identifiers for SEPT10 Gene

  • GC02M109850
  • GC02M109912
  • GC02M109657
  • GC02M110300
  • GC02M103756

Summaries for SEPT10 Gene

Entrez Gene Summary for SEPT10 Gene

  • This gene encodes a member of the septin family of cytoskeletal proteins with GTPase activity. This protein localizes to the cytoplasm and nucleus and displays GTP-binding and GTPase activity. A pseudogene for this gene is located on chromosome 8. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2012]

GeneCards Summary for SEPT10 Gene

SEPT10 (Septin 10) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include GTP binding. An important paralog of this gene is SEPT8.

UniProtKB/Swiss-Prot for SEPT10 Gene

  • Filament-forming cytoskeletal GTPase. May play a role in cytokinesis (Potential).

Additional gene information for SEPT10 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEPT10 Gene

Genomics for SEPT10 Gene

GeneHancer (GH) Regulatory Elements for SEPT10 Gene

Promoters and enhancers for SEPT10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J109605 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 665.7 +3.0 2989 11 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 SEPT10 RANBP2 SOWAHC SMIM37 GPAA1P2 ENSG00000230696
GH02J109567 Promoter 0.5 EPDnew 662 +46.3 46310 0.1 SEPT10 SOWAHC RPL37P12 GC02M109583
GH02J109635 Enhancer 1.3 FANTOM5 Ensembl ENCODE 14.1 -23.0 -23046 3.8 ELF3 FOXA2 MLX ARID4B BATF DNMT3B RARA ATF7 ZNF548 IKZF2 GC02P109639 SOWAHC SEPT10 RANBP2 RGPD6
GH02J109557 Enhancer 1.1 Ensembl ENCODE 14.1 +55.4 55365 2.1 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 FOS RXRA MIER2 REST SEPT10 SOWAHC RPL37P12 GC02M109583
GH02J109643 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.2 -30.8 -30760 3.8 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 PAF1 SP5 ZHX2 GC02M109643 SEPT10 LOC645135 LINC01123 ENSG00000230603 GC02M109641 GC02M109642
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPT10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SEPT10 gene promoter:
  • Nkx2-5
  • IRF-7A
  • C/EBPalpha
  • LHX3b
  • Lhx3a
  • IRF-1
  • MyoD
  • Lmo2

Genomic Locations for SEPT10 Gene

Genomic Locations for SEPT10 Gene
chr2:109,542,797-109,614,206
(GRCh38/hg38)
Size:
71,410 bases
Orientation:
Minus strand
chr2:110,300,376-110,371,783
(GRCh37/hg19)
Size:
71,408 bases
Orientation:
Minus strand

Genomic View for SEPT10 Gene

Genes around SEPT10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPT10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPT10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPT10 Gene

Proteins for SEPT10 Gene

  • Protein details for SEPT10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P0V9-SEP10_HUMAN
    Recommended name:
    Septin-10
    Protein Accession:
    Q9P0V9
    Secondary Accessions:
    • B3KRQ9
    • Q86VP5
    • Q9HAH6

    Protein attributes for SEPT10 Gene

    Size:
    454 amino acids
    Molecular mass:
    52593 Da
    Quaternary structure:
    • Septins polymerize into heterooligomeric protein complexes that form filaments, and can associate with cellular membranes, actin filaments and microtubules. GTPase activity is required for filament formation (By similarity).
    SequenceCaution:
    • Sequence=AAF67469.1; Type=Frameshift; Positions=444; Evidence={ECO:0000305};

    Alternative splice isoforms for SEPT10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SEPT10 Gene

Post-translational modifications for SEPT10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SEPT10 Gene

Domains & Families for SEPT10 Gene

Gene Families for SEPT10 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for SEPT10 Gene

Graphical View of Domain Structure for InterPro Entry

Q9P0V9

UniProtKB/Swiss-Prot:

SEP10_HUMAN :
  • Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
Family:
  • Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
genes like me logo Genes that share domains with SEPT10: view

No data available for Suggested Antigen Peptide Sequences for SEPT10 Gene

Function for SEPT10 Gene

Molecular function for SEPT10 Gene

UniProtKB/Swiss-Prot Function:
Filament-forming cytoskeletal GTPase. May play a role in cytokinesis (Potential).

Gene Ontology (GO) - Molecular Function for SEPT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IBA --
GO:0005515 protein binding IPI 25416956
GO:0005525 GTP binding IEA --
GO:0032947 protein-containing complex scaffold activity IBA --
genes like me logo Genes that share ontologies with SEPT10: view
genes like me logo Genes that share phenotypes with SEPT10: view

Animal Models for SEPT10 Gene

MGI Knock Outs for SEPT10:
  • Sept10 Sept10<tm1a(KOMP)Wtsi>

Animal Model Products

CRISPR Products

miRNA for SEPT10 Gene

miRTarBase miRNAs that target SEPT10

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SEPT10

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SEPT10 Gene

Localization for SEPT10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEPT10 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Note=Using a GFP-fusion protein, detected in the nucleus. {ECO:0000269 PubMed:12711328}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SEPT10 gene
Compartment Confidence
cytoskeleton 4
cytosol 3
nucleus 2
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SEPT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005940 septin ring IBA --
GO:0015630 microtubule cytoskeleton IBA --
GO:0031105 septin complex IBA --
genes like me logo Genes that share ontologies with SEPT10: view

Pathways & Interactions for SEPT10 Gene

SuperPathways for SEPT10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEPT10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000281 mitotic cytokinesis IBA --
GO:0000921 septin ring assembly IBA --
GO:0007049 cell cycle IEA --
GO:0034613 cellular protein localization IBA --
GO:0051301 cell division IEA --
genes like me logo Genes that share ontologies with SEPT10: view

No data available for Pathways by source and SIGNOR curated interactions for SEPT10 Gene

Drugs & Compounds for SEPT10 Gene

(1) Drugs for SEPT10 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with SEPT10: view

Transcripts for SEPT10 Gene

Unigene Clusters for SEPT10 Gene

Septin 10:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SEPT10

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEPT10 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b
SP1: -
SP2:
SP3: - - - - -
SP4:
SP5:
SP6: - - - - - - - - - -
SP7: -
SP8: - - - -
SP9: - -
SP10: - - - - - - -
SP11: - -
SP12: - - - - - - - - -
SP13:

Relevant External Links for SEPT10 Gene

GeneLoc Exon Structure for
SEPT10
ECgene alternative splicing isoforms for
SEPT10

Expression for SEPT10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEPT10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SEPT10 Gene



Protein tissue co-expression partners for SEPT10 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for SEPT10 Gene:

Hs.469615

mRNA Expression by UniProt/SwissProt for SEPT10 Gene:

Q9P0V9-SEP10_HUMAN
Tissue specificity: Widely expressed. Abundantly expressed in heart and kidney, placenta, skeletal muscles, liver and lung, as well as various tumor cell lines.

Evidence on tissue expression from TISSUES for SEPT10 Gene

  • Blood(4.3)
  • Spleen(4.3)
  • Lymph node(4.2)
  • Nervous system(3.2)
genes like me logo Genes that share expression patterns with SEPT10: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPT10 Gene

Orthologs for SEPT10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SEPT10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SEPT10 33
  • 99.93 (n)
dog
(Canis familiaris)
Mammalia SEPT10 34 33
  • 91.34 (n)
OneToOne
cow
(Bos Taurus)
Mammalia SEPT10 34 33
  • 88.42 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sept10 33
  • 86.78 (n)
mouse
(Mus musculus)
Mammalia Sept10 16 34 33
  • 85.81 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 81 (a)
OneToMany
-- 34
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SEPT10 34
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves SEPT10 34 33
  • 75.13 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SEPT10 34
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sept10 33
  • 71.44 (n)
Str.6034 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.7604 33
zebrafish
(Danio rerio)
Actinopterygii sept10 34 34 33
  • 72.33 (n)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 67 (a)
OneToMany
Species where no ortholog for SEPT10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SEPT10 Gene

ENSEMBL:
Gene Tree for SEPT10 (if available)
TreeFam:
Gene Tree for SEPT10 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SEPT10: view image

Paralogs for SEPT10 Gene

Paralogs for SEPT10 Gene

(18) SIMAP similar genes for SEPT10 Gene using alignment to 13 proteins:

  • SEP10_HUMAN
  • B5ME97_HUMAN
  • B7Z277_HUMAN
  • B7Z371_HUMAN
  • C9JEQ7_HUMAN
  • C9JEW2_HUMAN
  • C9JNR7_HUMAN
  • E7EW69_HUMAN
  • E7EX04_HUMAN
  • F5GYV2_HUMAN
  • F5H1F2_HUMAN
  • F5H1W3_HUMAN
  • F8WC85_HUMAN

Pseudogenes.org Pseudogenes for SEPT10 Gene

genes like me logo Genes that share paralogs with SEPT10: view

Variants for SEPT10 Gene

Sequence variations from dbSNP and Humsavar for SEPT10 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000035955 -- 109,544,151(-) G/C/T 3_prime_UTR_variant, coding_sequence_variant, downstream_transcript_variant, genic_downstream_transcript_variant, missense_variant, non_coding_transcript_variant
rs1000045476 -- 109,571,818(-) A/T intron_variant
rs1000059540 -- 109,572,378(-) C/T intron_variant
rs1000113076 -- 109,596,155(-) C/T intron_variant
rs1000115271 -- 109,612,423(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SEPT10 Gene

Variant ID Type Subtype PubMed ID
dgv1162e212 CNV gain 25503493
dgv4037n100 CNV gain 25217958
esv2657195 CNV deletion 23128226
esv2762780 CNV gain 21179565
esv3559936 CNV deletion 23714750
esv3591944 CNV gain 21293372
nsv1114125 CNV deletion 24896259
nsv1149522 OTHER inversion 26484159
nsv2874 CNV deletion 18451855
nsv510884 OTHER complex 20534489
nsv829617 CNV gain 20364138

Variation tolerance for SEPT10 Gene

Residual Variation Intolerance Score: 33.2% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SEPT10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPT10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SEPT10 Gene

Disorders for SEPT10 Gene

Additional Disease Information for SEPT10

No disorders were found for SEPT10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPT10 Gene

Publications for SEPT10 Gene

  1. Cloning and functional characterization of human septin 10, a novel member of septin family cloned from dendritic cells. (PMID: 12711328) Sui L … Cao X (Biochemical and biophysical research communications 2003) 2 3 4 22 58
  2. Are surrogates of IGHV gene mutational status useful in B-cell chronic lymphocytic leukemia? The example of Septin-10. (PMID: 17657217) Benedetti D … Gattei V (Leukemia 2008) 3 22 58
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3 4 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for SEPT10 Gene

Sources for SEPT10 Gene

Content
Loading form....