Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CRIP2 Gene

Aliases for CRIP2 Gene

  • Cysteine Rich Protein 2 2 3 5
  • CRP2 3 4
  • Cysteine-Rich Intestinal Protein 3
  • LIM Domain Protein ESP1/CRP2 3
  • Cysteine-Rich Protein 2 3
  • Protein ESP1 4
  • CRP-2 4
  • ESP1 3
  • CRIP 3

External Ids for CRIP2 Gene

Previous GeneCards Identifiers for CRIP2 Gene

  • GC14U990010
  • GC14P099932
  • GC14P103911
  • GC14P103912
  • GC14P105012
  • GC14P105939
  • GC14P086136

Summaries for CRIP2 Gene

Entrez Gene Summary for CRIP2 Gene

  • This gene encodes a putative transcription factor with two LIM zinc-binding domains. The encoded protein may participate in the differentiation of smooth muscle tissue. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]

GeneCards Summary for CRIP2 Gene

CRIP2 (Cysteine Rich Protein 2) is a Protein Coding gene. An important paralog of this gene is CRIP3.

Gene Wiki entry for CRIP2 Gene

Additional gene information for CRIP2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CRIP2 Gene

Genomics for CRIP2 Gene

GeneHancer (GH) Regulatory Elements for CRIP2 Gene

Promoters and enhancers for CRIP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I105470 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +1.4 1379 8 HDGF PKNOX1 ZFP64 ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 GLIS2 CRIP2 MTA1 ENSG00000257270 BRF1 CLBA1 LINC00638 ENSG00000258811 TMEM121 CRIP1
GH14I104984 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 4.8 -487.4 -487360 2.7 HDGF ATF1 ARID4B SIN3A ELK1 ZNF143 SP3 MXD4 REST RFX3 CLBA1 AHNAK2 GPR132 CRIP2
GH14I105418 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 4.6 -52.1 -52138 4.1 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 GLIS2 RXRA SP5 MTA1 LOC100507437 ENSG00000257270 CRIP2 TEX22 GC14M105345
GH14I105192 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -276.6 -276553 7.2 NFIB SIN3A ZNF2 ZNF335 GLIS2 EGR1 RCOR1 EGR2 USF2 GLIS1 BTBD6 NUDT14 IGHA2 CRIP2 TMEM121 JAG2 PIR42636
GH14I104814 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 4.1 -657.1 -657140 2.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ENSG00000279140 MTA1 LINC00638 ENSG00000257270 CDCA4 TMEM121 PACS2 CEP170B CRIP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CRIP2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the CRIP2 gene promoter:

Genomic Locations for CRIP2 Gene

Genomic Locations for CRIP2 Gene
chr14:105,472,938-105,480,170
(GRCh38/hg38)
Size:
7,233 bases
Orientation:
Plus strand
chr14:105,939,299-105,946,500
(GRCh37/hg19)

Genomic View for CRIP2 Gene

Genes around CRIP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CRIP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CRIP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CRIP2 Gene

Proteins for CRIP2 Gene

  • Protein details for CRIP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P52943-CRIP2_HUMAN
    Recommended name:
    Cysteine-rich protein 2
    Protein Accession:
    P52943
    Secondary Accessions:
    • A1A4U1
    • B7Z6C0
    • E9PD13

    Protein attributes for CRIP2 Gene

    Size:
    208 amino acids
    Molecular mass:
    22493 Da
    Quaternary structure:
    • Interacts with TGFB1I1.

    Three dimensional structures from OCA and Proteopedia for CRIP2 Gene

    Alternative splice isoforms for CRIP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CRIP2 Gene

Post-translational modifications for CRIP2 Gene

No Post-translational modifications

Other Protein References for CRIP2 Gene

No data available for DME Specific Peptides for CRIP2 Gene

Domains & Families for CRIP2 Gene

Gene Families for CRIP2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CRIP2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CRIP2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CRIP2: view

No data available for UniProtKB/Swiss-Prot for CRIP2 Gene

Function for CRIP2 Gene

Molecular function for CRIP2 Gene

GENATLAS Biochemistry:
cysteine-rich heart protein 2

Phenotypes From GWAS Catalog for CRIP2 Gene

Gene Ontology (GO) - Molecular Function for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21540330
GO:0008270 zinc ion binding TAS 8824798
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CRIP2: view

Phenotypes for CRIP2 Gene

GenomeRNAi human phenotypes for CRIP2:
genes like me logo Genes that share phenotypes with CRIP2: view

Animal Model Products

miRNA for CRIP2 Gene

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CRIP2 Gene

Localization for CRIP2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CRIP2 gene
Compartment Confidence
nucleus 4
cytosol 3
plasma membrane 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoli (2)
  • Nucleus (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005938 cell cortex IEA --
GO:0031012 colocalizes_with extracellular matrix IDA 20551380
genes like me logo Genes that share ontologies with CRIP2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CRIP2 Gene

Pathways & Interactions for CRIP2 Gene

SuperPathways for CRIP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CRIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008284 positive regulation of cell proliferation IEA --
GO:0030097 hemopoiesis IEA --
genes like me logo Genes that share ontologies with CRIP2: view

No data available for Pathways by source and SIGNOR curated interactions for CRIP2 Gene

Drugs & Compounds for CRIP2 Gene

(1) Drugs for CRIP2 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for CRIP2 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with CRIP2: view

Transcripts for CRIP2 Gene

Unigene Clusters for CRIP2 Gene

Cysteine-rich protein 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CRIP2 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b · 13c · 13d
SP1: - - - - - - -
SP2: - - -
SP3: - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - -
SP6: - - -
SP7: - - -
SP8: - - - - -
SP9: - - - - - - - - - - - - - -
SP10: - - - - - -
SP11:

Relevant External Links for CRIP2 Gene

GeneLoc Exon Structure for
CRIP2
ECgene alternative splicing isoforms for
CRIP2

Expression for CRIP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CRIP2 Gene

mRNA differential expression in normal tissues according to GTEx for CRIP2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x5.8) and Heart - Left Ventricle (x5.6).

Protein differential expression in normal tissues from HIPED for CRIP2 Gene

This gene is overexpressed in Hair follicle (9.4) and Fetal heart (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CRIP2 Gene



Protein tissue co-expression partners for CRIP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CRIP2 Gene:

CRIP2

SOURCE GeneReport for Unigene cluster for CRIP2 Gene:

Hs.534309

mRNA Expression by UniProt/SwissProt for CRIP2 Gene:

P52943-CRIP2_HUMAN
Tissue specificity: Widespread tissue expression; highest levels in the heart.

Evidence on tissue expression from TISSUES for CRIP2 Gene

  • Heart(4.7)
  • Lung(4.6)
  • Nervous system(4.3)
  • Liver(4.2)
  • Pancreas(3.6)
  • Muscle(2.7)
  • Kidney(2)
genes like me logo Genes that share expression patterns with CRIP2: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CRIP2 Gene

Orthologs for CRIP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for CRIP2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CRIP2 33
  • 89.74 (n)
dog
(Canis familiaris)
Mammalia CRIP2 33 34
  • 88.46 (n)
mouse
(Mus musculus)
Mammalia Crip2 34
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CRIP2 34
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563606 33
  • 84.65 (n)
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 64 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia CRIP2 34
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves CRIP2 34
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CRIP2 34
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.28352 33
zebrafish
(Danio rerio)
Actinopterygii crip2 33 34
  • 70.71 (n)
zgc:101840 34
  • 69 (a)
ManyToMany
Dr.5660 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9800 33
worm
(Caenorhabditis elegans)
Secernentea exc-9 34
  • 58 (a)
ManyToMany
valv-1 34
  • 58 (a)
ManyToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7243 33
Species where no ortholog for CRIP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CRIP2 Gene

ENSEMBL:
Gene Tree for CRIP2 (if available)
TreeFam:
Gene Tree for CRIP2 (if available)

Paralogs for CRIP2 Gene

Paralogs for CRIP2 Gene

(14) SIMAP similar genes for CRIP2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with CRIP2: view

Variants for CRIP2 Gene

Sequence variations from dbSNP and Humsavar for CRIP2 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1001013417 -- 105,474,085(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1002227634 -- 105,473,699(+) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1002460344 -- 105,479,338(+) T/C intron_variant
rs1002740023 -- 105,478,188(+) G/C/T intron_variant
rs1003117198 -- 105,478,294(+) C/T coding_sequence_variant, intron_variant, non_coding_transcript_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for CRIP2 Gene

Variant ID Type Subtype PubMed ID
nsv952282 CNV deletion 24416366
nsv9177 CNV gain 18304495
nsv832890 CNV loss 17160897
nsv827088 CNV gain 20364138
nsv817647 CNV gain 17921354
nsv566265 CNV loss 21841781
nsv566259 CNV gain+loss 21841781
nsv566229 CNV loss 21841781
nsv566220 CNV gain+loss 21841781
nsv566219 CNV gain 21841781
nsv566218 CNV loss 21841781
nsv566210 CNV gain 21841781
nsv566209 CNV gain+loss 21841781
nsv566207 CNV loss 21841781
nsv566206 CNV loss 21841781
nsv566204 CNV gain 21841781
nsv566189 CNV gain 21841781
nsv517055 CNV gain+loss 19592680
nsv513421 CNV insertion 21212237
nsv470679 CNV loss 18288195
nsv1440 CNV insertion 18451855
nsv1160204 CNV duplication 26073780
nsv1113680 CNV deletion 24896259
nsv1054190 CNV gain 25217958
esv3635645 CNV gain 21293372
esv3398322 CNV duplication 20981092
esv2856347 CNV duplication 24192839
esv2760014 CNV loss 17122850
esv2749298 CNV deletion 23290073
esv21791 CNV loss 19812545
esv1077360 CNV deletion 17803354
esv1004211 CNV insertion 20482838
dgv3999n54 CNV loss 21841781
dgv3998n54 CNV loss 21841781
dgv3997n54 CNV loss 21841781
dgv3996n54 CNV gain 21841781
dgv3995n54 CNV loss 21841781
dgv3994n54 CNV gain 21841781
dgv3993n54 CNV gain 21841781
dgv3992n54 CNV gain+loss 21841781
dgv3991n54 CNV loss 21841781
dgv3990n54 CNV gain 21841781
dgv3989n54 CNV gain 21841781
dgv3988n54 CNV gain 21841781
dgv3987n54 CNV loss 21841781

Variation tolerance for CRIP2 Gene

Gene Damage Index Score: 0.99; 20.45% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CRIP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CRIP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CRIP2 Gene

Disorders for CRIP2 Gene

Additional Disease Information for CRIP2

No disorders were found for CRIP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CRIP2 Gene

Publications for CRIP2 Gene

  1. Human ESP1/CRP2, a member of the LIM domain protein family: characterization of the cDNA and assignment of the gene locus to chromosome 14q32.3. (PMID: 8824798) Karim MA … Indo Y (Genomics 1996) 3 4 22 58
  2. A novel cDNA encoding for a LIM domain protein located at human chromosome 14q32 as a candidate for leukemic translocation. (PMID: 8843343) Tsui SK … Lee CY (Biochemistry and molecular biology international 1996) 2 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL. (PMID: 12839623) van Ham M … Hendriks W (Genes to cells : devoted to molecular & cellular mechanisms 2003) 3 22 58

Products for CRIP2 Gene

Sources for CRIP2 Gene

Content
Loading form....