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Aliases for GLMN Gene

Aliases for GLMN Gene

  • Glomulin, FKBP Associated Protein 2 3 5
  • FK506-Binding Protein-Associated Protein 3 4
  • FKBP-Associated Protein 3 4
  • VMGLOM 3 4
  • FAP48 3 4
  • FAP68 3 4
  • FAP 3 4
  • Venous Malformation With Glomus Cells 2
  • Glomulin 3
  • FKBPAP 3
  • GLML 3
  • GVM 3

External Ids for GLMN Gene

Previous HGNC Symbols for GLMN Gene

  • VMGLOM

Previous GeneCards Identifiers for GLMN Gene

  • GC01M092048
  • GC01M092184
  • GC01M092185
  • GC01M092424
  • GC01M092484
  • GC01M092711
  • GC01M090832

Summaries for GLMN Gene

Entrez Gene Summary for GLMN Gene

  • This gene encodes a phosphorylated protein that is a member of a Skp1-Cullin-F-box-like complex. The protein is essential for normal development of the vasculature and mutations in this gene have been associated with glomuvenous malformations, also called glomangiomas. Multiple splice variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016]

GeneCards Summary for GLMN Gene

GLMN (Glomulin, FKBP Associated Protein) is a Protein Coding gene. Diseases associated with GLMN include Glomuvenous Malformations and Human Venous Malformation. Gene Ontology (GO) annotations related to this gene include ubiquitin protein ligase binding and ubiquitin-protein transferase inhibitor activity.

UniProtKB/Swiss-Prot for GLMN Gene

  • Essential for normal development of the vasculature. May represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12. May function as an membrane anchoring protein. Isoform 1 may stimulate the p70S6K pathway. Isoform 2 may inhibit cell proliferation and increase IL2 production.

Gene Wiki entry for GLMN Gene

Additional gene information for GLMN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLMN Gene

Genomics for GLMN Gene

GeneHancer (GH) Regulatory Elements for GLMN Gene

Promoters and enhancers for GLMN Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092297 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.1 +142.9 142949 2.4 HDGF ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF207 RPAP2 GLMN EVI5 GC01P092398
GH01J092441 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 650.7 0.0 -36 1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 NFKBIZ SP5 NFYC MXD4 GLMN SNORD21 RPL5 SNORA66 GC01P092463
GH01J093078 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 29.3 -638.5 -638489 4.5 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 MTF2 CCDC18-AS1 SNORA66 SNORD21 RPL5 TRR-TCT1-1 GLMN DR1 RPAP2 DNTTIP2
GH01J092831 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 28.8 -391.5 -391483 4.2 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 RPL5 GC01P092832 SNORA66 SNORD21 MTF2 CCDC18-AS1 DR1 ENSG00000230439 GLMN RPAP2
GH01J093177 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21 -738.0 -738029 4.8 FEZF1 DMAP1 IRF4 YY1 ZNF213 ZNF416 ZNF143 ZNF548 ZNF263 SP3 CCDC18 GC01M093180 TMED5 CCDC18-AS1 SNORA66 SNORD21 RPL5 DNTTIP2 ENSG00000230439 MTF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GLMN on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the GLMN gene promoter:
  • AML1a
  • Arnt
  • AhR
  • Pax-2a
  • Pax-2
  • C/EBPalpha
  • POU3F2
  • POU3F2 (N-Oct-5a)

Genomic Locations for GLMN Gene

Genomic Locations for GLMN Gene
chr1:92,246,398-92,441,946
(GRCh38/hg38)
Size:
195,549 bases
Orientation:
Minus strand
chr1:92,711,955-92,764,566
(GRCh37/hg19)
Size:
52,612 bases
Orientation:
Minus strand

Genomic View for GLMN Gene

Genes around GLMN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLMN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLMN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLMN Gene

Proteins for GLMN Gene

  • Protein details for GLMN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92990-GLMN_HUMAN
    Recommended name:
    Glomulin
    Protein Accession:
    Q92990
    Secondary Accessions:
    • Q5VVC3
    • Q9BVE8

    Protein attributes for GLMN Gene

    Size:
    594 amino acids
    Molecular mass:
    68208 Da
    Quaternary structure:
    • Monomer. Isoform 1 interacts with notphosphorylated MET and is released upon receptor phosphorylation. Isoform 2 interacts with FKBP59 and FKBP12. Isoform 1 is part of a SCF-like complex consisting of CUL7, RBX1, SKP1, FBXW8 and GLMN isoform 1.
    Miscellaneous:
    • Rapamycin and FK506 abolish the interaction in a dose dependent manner.

    Three dimensional structures from OCA and Proteopedia for GLMN Gene

    Alternative splice isoforms for GLMN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GLMN Gene

Post-translational modifications for GLMN Gene

No data available for DME Specific Peptides for GLMN Gene

Domains & Families for GLMN Gene

Gene Families for GLMN Gene

Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins

Protein Domains for GLMN Gene

Suggested Antigen Peptide Sequences for GLMN Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GLMN: view

No data available for UniProtKB/Swiss-Prot for GLMN Gene

Function for GLMN Gene

Molecular function for GLMN Gene

UniProtKB/Swiss-Prot Function:
Essential for normal development of the vasculature. May represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12. May function as an membrane anchoring protein. Isoform 1 may stimulate the p70S6K pathway. Isoform 2 may inhibit cell proliferation and increase IL2 production.

Phenotypes From GWAS Catalog for GLMN Gene

Gene Ontology (GO) - Molecular Function for GLMN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005171 hepatocyte growth factor receptor binding IPI 11571281
GO:0005515 protein binding IPI 11164950
GO:0031625 ubiquitin protein ligase binding IDA 22405651
GO:0055105 ubiquitin-protein transferase inhibitor activity IGI 22405651
genes like me logo Genes that share ontologies with GLMN: view
genes like me logo Genes that share phenotypes with GLMN: view

Human Phenotype Ontology for GLMN Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for GLMN

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GLMN

Clone Products

  • Addgene plasmids for GLMN

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for GLMN Gene

Localization for GLMN Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GLMN gene
Compartment Confidence
nucleus 3
cytosol 3
plasma membrane 2
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for GLMN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular NAS 12604780
GO:0005737 cytoplasm IBA --
GO:0031461 cullin-RING ubiquitin ligase complex IPI 22405651
GO:0031462 Cul2-RING ubiquitin ligase complex IPI 22405651
GO:0031463 Cul3-RING ubiquitin ligase complex IPI 22405651
genes like me logo Genes that share ontologies with GLMN: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for GLMN Gene

Pathways & Interactions for GLMN Gene

No Data Available

SIGNOR curated interactions for GLMN Gene

Is inactivated by:

Gene Ontology (GO) - Biological Process for GLMN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001570 vasculogenesis IMP 11845407
GO:0001843 neural tube closure IEA --
GO:0031397 negative regulation of protein ubiquitination IEA --
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process IMP 22405651
GO:0040029 regulation of gene expression, epigenetic IMP 12604780
genes like me logo Genes that share ontologies with GLMN: view

No data available for Pathways by source for GLMN Gene

Drugs & Compounds for GLMN Gene

(2) Drugs for GLMN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with GLMN: view

Transcripts for GLMN Gene

Unigene Clusters for GLMN Gene

Glomulin, FKBP associated protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GLMN

Clone Products

  • Addgene plasmids for GLMN

Alternative Splicing Database (ASD) splice patterns (SP) for GLMN Gene

No ASD Table

Relevant External Links for GLMN Gene

GeneLoc Exon Structure for
GLMN
ECgene alternative splicing isoforms for
GLMN

Expression for GLMN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GLMN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for GLMN Gene

This gene is overexpressed in Bone (53.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for GLMN Gene



Protein tissue co-expression partners for GLMN Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GLMN Gene:

GLMN

SOURCE GeneReport for Unigene cluster for GLMN Gene:

Hs.49105

mRNA Expression by UniProt/SwissProt for GLMN Gene:

Q92990-GLMN_HUMAN
Tissue specificity: Ubiquitous.

Phenotype-based relationships between genes and organs from Gene ORGANizer for GLMN Gene

Germ Layers:
  • ectoderm
Systems:
  • integumentary
Regions:
General:
  • skin
genes like me logo Genes that share expression patterns with GLMN: view

No data available for mRNA differential expression in normal tissues and Evidence on tissue expression from TISSUES for GLMN Gene

Orthologs for GLMN Gene

This gene was present in the common ancestor of animals.

Orthologs for GLMN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GLMN 34 33
  • 99.49 (n)
OneToOne
dog
(Canis familiaris)
Mammalia GLMN 34 33
  • 92.96 (n)
OneToOne
cow
(Bos Taurus)
Mammalia GLMN 34 33
  • 90.47 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Glmn 16 34 33
  • 86.86 (n)
rat
(Rattus norvegicus)
Mammalia Glmn 33
  • 84.49 (n)
oppossum
(Monodelphis domestica)
Mammalia GLMN 34
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GLMN 34
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves GLMN 34 33
  • 70.34 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GLMN 34
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia glmn 33
  • 64.92 (n)
Str.13614 33
African clawed frog
(Xenopus laevis)
Amphibia MGC69174 33
zebrafish
(Danio rerio)
Actinopterygii glmna 34 33
  • 57.18 (n)
OneToMany
glmnb 34
  • 42 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004843 33
  • 41.31 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG30496 34 33
  • 41.04 (n)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 30 (a)
OneToOne
Species where no ortholog for GLMN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GLMN Gene

ENSEMBL:
Gene Tree for GLMN (if available)
TreeFam:
Gene Tree for GLMN (if available)
Aminode:
Evolutionary constrained regions (ECRs) for GLMN: view image

Paralogs for GLMN Gene

No data available for Paralogs for GLMN Gene

Variants for GLMN Gene

Sequence variations from dbSNP and Humsavar for GLMN Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs139873200 likely-benign, Glomuvenous malformations 92,289,004(-) A/G/T 5_prime_UTR_variant, coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs142032681 likely-benign, Glomuvenous malformations 92,297,425(-) A/C 5_prime_UTR_variant, coding_sequence_variant, intron_variant, missense_variant, non_coding_transcript_variant
rs142642620 likely-benign, Glomuvenous malformations 92,269,714(-) C/G/T intron_variant
rs144577963 likely-benign, Glomuvenous malformations 92,291,432(-) C/T 5_prime_UTR_variant, coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs145401012 likely-benign, Glomuvenous malformations 92,298,948(-) A/C 5_prime_UTR_variant, genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GLMN Gene

Variant ID Type Subtype PubMed ID
esv2714684 CNV deletion 23290073
nsv518196 CNV loss 19592680
nsv830592 CNV gain 17160897

Variation tolerance for GLMN Gene

Residual Variation Intolerance Score: 77.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.47; 55.03% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GLMN Gene

Human Gene Mutation Database (HGMD)
GLMN
SNPedia medical, phenotypic, and genealogical associations of SNPs for
GLMN

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GLMN Gene

Disorders for GLMN Gene

MalaCards: The human disease database

(11) MalaCards diseases for GLMN Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search GLMN in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

GLMN_HUMAN
  • Glomuvenous malformations (GVMs) [MIM:138000]: Characterized by the presence of smooth-muscle-like glomus cells in the media surrounding distended vascular lumens. {ECO:0000269 PubMed:11845407}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for GLMN

genes like me logo Genes that share disorders with GLMN: view

No data available for Genatlas for GLMN Gene

Publications for GLMN Gene

  1. FAP48, a new protein that forms specific complexes with both immunophilins FKBP59 and FKBP12. Prevention by the immunosuppressant drugs FK506 and rapamycin. (PMID: 8955134) Chambraud B … Baulieu EE (The Journal of biological chemistry 1996) 2 3 4 22 58
  2. The FKBP-associated protein FAP48 is an antiproliferative molecule and a player in T cell activation that increases IL2 synthesis. (PMID: 12604780) Krummrei U … Chambraud B (Proceedings of the National Academy of Sciences of the United States of America 2003) 3 4 22 58
  3. Mutations in a novel factor, glomulin, are responsible for glomuvenous malformations ("glomangiomas"). (PMID: 11845407) Brouillard P … Vikkula M (American journal of human genetics 2002) 3 4 22 58
  4. Ligand-regulated binding of FAP68 to the hepatocyte growth factor receptor. (PMID: 11571281) Grisendi S … Crepaldi T (The Journal of biological chemistry 2001) 3 4 22 58
  5. Four common glomulin mutations cause two thirds of glomuvenous malformations ("familial glomangiomas"): evidence for a founder effect. (PMID: 15689436) Brouillard P … Vikkula M (Journal of medical genetics 2005) 3 22 58

Products for GLMN Gene

Sources for GLMN Gene

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