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Aliases for MIR6079 Gene

Subcategory (RNA class) for MIR6079 Gene

miRNA

Quality Score for this RNA gene is

13

Aliases for MIR6079 Gene

  • MicroRNA 6079 2 3 5
  • MicroRNA Mir-6079 3
  • Hsa-Mir-6079 3

External Ids for MIR6079 Gene

Previous GeneCards Identifiers for MIR6079 Gene

  • GC01U904158

Summaries for MIR6079 Gene

Entrez Gene Summary for MIR6079 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6079 Gene

MIR6079 (MicroRNA 6079) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR6079 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR6079 Gene

Genomics for MIR6079 Gene

GeneHancer (GH) Regulatory Elements for MIR6079 Gene

Promoters and enhancers for MIR6079 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J043838 Promoter/Enhancer 0.7 EPDnew dbSUPER 650.7 -0.5 -477 0.1 MIR6079 ST3GAL3 ARTN GC01M043833 ENSG00000284989
GH01J043841 Enhancer 0.4 ENCODE 0.7 +3.1 3145 1.5 SP1 ZNF707 NANOG KDM4A-AS1 SZT2 ARTN KIF2C LOC101929609 IPO13 LOC101929592 ST3GAL3 MED8 MIR6079
GH01J043847 Enhancer 0.7 Ensembl dbSUPER 0.4 +8.9 8932 0.5 ZNF146 JUND GATA3 HLF ARTN ST3GAL3 SHMT1P1 MIR6079 ENSG00000284989
GH01J043843 Enhancer 0.5 ENCODE 0.4 +5.8 5799 1 CTCF ATF4 GATA3 CEBPG HNF4A ZBTB33 RAD21 ARTN SHMT1P1 MIR6079 ST3GAL3 ENSG00000284989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR6079 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR6079 Gene

Genomic Locations for MIR6079 Gene
chr1:43,838,622-43,838,683
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Genomic View for MIR6079 Gene

Genes around MIR6079 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR6079 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6079 Gene

Proteins for MIR6079 Gene

Post-translational modifications for MIR6079 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6079 Gene

Domains & Families for MIR6079 Gene

Gene Families for MIR6079 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR6079: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR6079 Gene

Function for MIR6079 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6079 Gene

Localization for MIR6079 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6079 Gene

Pathways & Interactions for MIR6079 Gene

SuperPathways for MIR6079 Gene

No Data Available

Interacting Proteins for MIR6079 Gene

Gene Ontology (GO) - Biological Process for MIR6079 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR6079 Gene

Drugs & Compounds for MIR6079 Gene

No Compound Related Data Available

Transcripts for MIR6079 Gene

mRNA/cDNA for MIR6079 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6079 Gene

No ASD Table

Relevant External Links for MIR6079 Gene

GeneLoc Exon Structure for
MIR6079
ECgene alternative splicing isoforms for
MIR6079

Expression for MIR6079 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR6079 Gene:

MIR6079
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6079 Gene

Orthologs for MIR6079 Gene

Evolution for MIR6079 Gene

ENSEMBL:
Gene Tree for MIR6079 (if available)
TreeFam:
Gene Tree for MIR6079 (if available)

No data available for Orthologs for MIR6079 Gene

Paralogs for MIR6079 Gene

No data available for Paralogs for MIR6079 Gene

Variants for MIR6079 Gene

Sequence variations from dbSNP and Humsavar for MIR6079 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs192651565 uncertain-significance, not specified 43,838,321(+) C/G upstream_transcript_variant
rs1000841039 -- 43,836,867(+) T/C upstream_transcript_variant
rs1001607413 -- 43,837,240(+) A/G upstream_transcript_variant
rs1002613458 -- 43,838,675(+) T/C non_coding_transcript_variant
rs1002692267 -- 43,837,563(+) C/G upstream_transcript_variant

Additional Variant Information for MIR6079 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6079

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR6079 Gene

Disorders for MIR6079 Gene

Additional Disease Information for MIR6079

No disorders were found for MIR6079 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6079 Gene

Publications for MIR6079 Gene

  1. Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs. (PMID: 22282338) Voellenkle C … Martelli F (RNA (New York, N.Y.) 2012) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR6079 Gene

Sources for MIR6079 Gene

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