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Aliases for LINC01279 Gene

Subcategory (RNA class) for LINC01279 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01279 Gene

  • Long Intergenic Non-Protein Coding RNA 1279 2 3
  • TCONS_00006930 3

External Ids for LINC01279 Gene

Summaries for LINC01279 Gene

GeneCards Summary for LINC01279 Gene

LINC01279 (Long Intergenic Non-Protein Coding RNA 1279) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01279 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01279 Gene

Genomics for LINC01279 Gene

GeneHancer (GH) Regulatory Elements for LINC01279 Gene

Promoters and enhancers for LINC01279 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J112634 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -37.6 -37625 10.2 PKNOX1 ZNF133 SIN3A ZNF2 POLR2B ARID2 ZNF143 FOS RUNX3 DEK CCDC80 CD200R1 ENSG00000242770 SPICE1 C3orf52 MIR567 SLC35A5 LINC01279
GH03J112604 Enhancer 0.8 ENCODE dbSUPER 0.7 -3.3 -3304 2.4 MXI1 RFX1 RNF2 JUN BMI1 NR2F2 POLR2A FOS PRDM1 SLC35A5 CD200R1 LINC01279 CCDC80
GH03J112615 Enhancer 0.9 ENCODE dbSUPER 0.4 -13.9 -13866 1.1 BACH1 ZNF644 E4F1 IRF9 DIDO1 NFE2 SRF ZNF639 RFX1 CAVIN1 NEPRO SPICE1 LOC101180897 CFAP44 BOC CCDC80 LINC01279
GH03J112628 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -27.7 -27701 1.4 FOSL1 ZNF335 JUND SMARCA4 JUN SIN3A FOSL2 REST FOS ZBTB17 ENSG00000242770 CD200R1 SLC35A5 CCDC80 LINC01279
GH03J112609 Enhancer 0.8 ENCODE dbSUPER 0.4 -8.3 -8256 0.9 FOSL1 ATF1 NCOA1 BACH1 CREB1 CEBPG ATF2 CREM ZNF395 LINC01279 CCDC80
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01279 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01279 Gene

Genomic Locations for LINC01279 Gene
chr3:112,596,794-112,601,969
(GRCh38/hg38)
Size:
5,176 bases
Orientation:
Minus strand
chr3:112,315,641-112,320,749
(GRCh37/hg19)
Size:
5,109 bases
Orientation:
Minus strand

Genomic View for LINC01279 Gene

Genes around LINC01279 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01279 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01279 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01279 Gene

Proteins for LINC01279 Gene

Post-translational modifications for LINC01279 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01279 Gene

Domains & Families for LINC01279 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01279 Gene

Function for LINC01279 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01279 Gene

Localization for LINC01279 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01279 Gene

Pathways & Interactions for LINC01279 Gene

SuperPathways for LINC01279 Gene

No Data Available

Interacting Proteins for LINC01279 Gene

Gene Ontology (GO) - Biological Process for LINC01279 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01279 Gene

Drugs & Compounds for LINC01279 Gene

No Compound Related Data Available

Transcripts for LINC01279 Gene

mRNA/cDNA for LINC01279 Gene

(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01279 Gene

No ASD Table

Relevant External Links for LINC01279 Gene

GeneLoc Exon Structure for
LINC01279
ECgene alternative splicing isoforms for
LINC01279

Expression for LINC01279 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01279 Gene:

LINC01279
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01279 Gene

Orthologs for LINC01279 Gene

No data available for Orthologs and Evolution for LINC01279 Gene

Paralogs for LINC01279 Gene

No data available for Paralogs for LINC01279 Gene

Variants for LINC01279 Gene

Sequence variations from dbSNP and Humsavar for LINC01279 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000050615 -- 112,600,973(-) T/C non_coding_transcript_variant
rs1000919042 -- 112,597,736(-) C/T non_coding_transcript_variant
rs1002923125 -- 112,603,705(-) A/G upstream_transcript_variant
rs1002985849 -- 112,601,922(-) A/G non_coding_transcript_variant
rs1003058887 -- 112,603,502(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01279 Gene

Variant ID Type Subtype PubMed ID
nsv591293 CNV loss 21841781
nsv591301 CNV loss 21841781

Additional Variant Information for LINC01279 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01279

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01279 Gene

Disorders for LINC01279 Gene

Additional Disease Information for LINC01279

No disorders were found for LINC01279 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01279 Gene

Publications for LINC01279 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01279 Gene

Sources for LINC01279 Gene

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