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Aliases for SLC25A25-AS1 Gene

Subcategory (RNA class) for SLC25A25-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SLC25A25-AS1 Gene

  • SLC25A25 Antisense RNA 1 2 3 5

External Ids for SLC25A25-AS1 Gene

Summaries for SLC25A25-AS1 Gene

GeneCards Summary for SLC25A25-AS1 Gene

SLC25A25-AS1 (SLC25A25 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SLC25A25-AS1 include Astrocytoma and Colorectal Cancer.

Additional gene information for SLC25A25-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A25-AS1 Gene

Genomics for SLC25A25-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A25-AS1 Gene

Promoters and enhancers for SLC25A25-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J128120 Enhancer 0.5 dbSUPER 650.7 -1.7 -1709 0.9 POLR2A MYNN RBM22 SUPT5H SLC25A25-AS1 PTGES2
GH09J128119 Enhancer 0.4 dbSUPER 650.7 -1.1 -1052 0.4 POLR2A RBM22 SLC25A25-AS1 PTGES2
GH09J128090 Promoter/Enhancer 1.7 EPDnew ENCODE dbSUPER 23.1 +25.5 25497 5.3 HDGF PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A YY1 TCF12 POLR2B SLC25A25 ENSG00000230536 GC09P128094 SLC25A25-AS1 PTGES2 PTGES2-AS1 NAIF1 ENSG00000230848 LCN2 C9orf16
GH09J128096 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.3 +17.9 17861 9 HDGF PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC25A25 NAIF1 PTGES2 CIZ1 ZNF79 PTGES2-AS1 NUP188 SLC25A25-AS1 LCN2 C9orf16
GH09J128786 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.1 -668.9 -668886 2.6 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC MEF2D TBC1D13 SPOUT1 MIGA2 LOC100506100 ZDHHC12 PKN3 KYAT1 LRRC8A SLC25A25-AS1 CIZ1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A25-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A25-AS1 Gene

Genomic Locations for SLC25A25-AS1 Gene
chr9:128,108,581-128,118,734
(GRCh38/hg38)
Size:
10,154 bases
Orientation:
Minus strand
chr9:130,873,450-130,881,013
(GRCh37/hg19)
Size:
7,564 bases
Orientation:
Minus strand

Genomic View for SLC25A25-AS1 Gene

Genes around SLC25A25-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A25-AS1 Gene

Proteins for SLC25A25-AS1 Gene

Post-translational modifications for SLC25A25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A25-AS1 Gene

Domains & Families for SLC25A25-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A25-AS1 Gene

Function for SLC25A25-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A25-AS1 Gene

Localization for SLC25A25-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A25-AS1 Gene

Pathways & Interactions for SLC25A25-AS1 Gene

SuperPathways for SLC25A25-AS1 Gene

No Data Available

Interacting Proteins for SLC25A25-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A25-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A25-AS1 Gene

Drugs & Compounds for SLC25A25-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A25-AS1 Gene

mRNA/cDNA for SLC25A25-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A25-AS1 Gene

No ASD Table

Relevant External Links for SLC25A25-AS1 Gene

GeneLoc Exon Structure for
SLC25A25-AS1
ECgene alternative splicing isoforms for
SLC25A25-AS1

Expression for SLC25A25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC25A25-AS1 Gene

genes like me logo Genes that share expression patterns with SLC25A25-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A25-AS1 Gene

Orthologs for SLC25A25-AS1 Gene

Evolution for SLC25A25-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A25-AS1 (if available)
TreeFam:
Gene Tree for SLC25A25-AS1 (if available)

No data available for Orthologs for SLC25A25-AS1 Gene

Paralogs for SLC25A25-AS1 Gene

No data available for Paralogs for SLC25A25-AS1 Gene

Variants for SLC25A25-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A25-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000166147 -- 128,111,056(-) A/G downstream_transcript_variant
rs1000421357 -- 128,120,655(-) T/C upstream_transcript_variant
rs1000475890 -- 128,114,666(-) C/T non_coding_transcript_variant
rs1000529270 -- 128,114,444(-) A/G non_coding_transcript_variant
rs1000932033 -- 128,112,799(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC25A25-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2739058 CNV deletion 23290073
esv2739059 CNV deletion 23290073
nsv471324 CNV gain 18288195
nsv615383 CNV loss 21841781
nsv6723 CNV deletion 18451855
nsv818724 CNV loss 17921354
nsv951769 CNV deletion 24416366

Additional Variant Information for SLC25A25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A25-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC25A25-AS1 Gene

Disorders for SLC25A25-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SLC25A25-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC25A25-AS1

genes like me logo Genes that share disorders with SLC25A25-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC25A25-AS1 Gene

Publications for SLC25A25-AS1 Gene

  1. Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells. (PMID: 27553025) Li Y … Huang C (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016) 2 3 58

Products for SLC25A25-AS1 Gene

Sources for SLC25A25-AS1 Gene

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