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Aliases for TPT1-AS1 Gene

Subcategory (RNA class) for TPT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TPT1-AS1 Gene

  • TPT1 Antisense RNA 1 2 3 5
  • TPT1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for TPT1-AS1 Gene

Previous GeneCards Identifiers for TPT1-AS1 Gene

  • GC13P045917
  • GC13P045926

Summaries for TPT1-AS1 Gene

GeneCards Summary for TPT1-AS1 Gene

TPT1-AS1 (TPT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TPT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPT1-AS1 Gene

Genomics for TPT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TPT1-AS1 Gene

Promoters and enhancers for TPT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J045338 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 673.4 -0.6 -575 4.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 TPT1-AS1 ENSG00000273149 GC13M045343 GC13M045344 TPT1 COG3 SLC25A30 PPIAP25 LOC105370188 ENSG00000225727
GH13J045372 Enhancer 0.8 ENCODE 45.6 +31.8 31750 1.6 INSM2 FEZF1 ZNF2 ZSCAN5C ZNF202 ZNF280D ZNF362 OVOL3 TSHZ1 ZEB2 TPT1-AS1 SLC25A30 COG3 TPT1 SLC25A30-AS1 GC13P045378 GC13P045379 GC13P045380 PIR60049 ENSG00000228886
GH13J045463 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.4 +123.8 123774 2.9 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B E2F8 COG3 RN7SL49P TPT1-AS1 GPALPP1 GC13M045553
GH13J045324 Enhancer 1.2 Ensembl ENCODE 22.7 -10.7 -10651 11.8 ATF1 FOXA2 PKNOX1 FEZF1 ZNF2 ETS1 YY1 ZNF121 POLR2B GLIS2 TPT1-AS1 SLC25A30 SLC25A30-AS1 SNORA31B TPT1 GC13P045300
GH13J044712 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.4 -626.9 -626912 3.8 ZFP64 ZNF213 RCOR1 FOS ZNF202 ZNF680 RXRA ZC3H11A CEBPB REST TSC22D1 COG3 GPALPP1 ERICH6B RN7SL49P TPT1-AS1 RCN1P2 SMARCE1P5 CCDC122 KCTD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPT1-AS1 Gene

Genomic Locations for TPT1-AS1 Gene
52,069 bases
Plus strand
50,393 bases
Plus strand

Genomic View for TPT1-AS1 Gene

Genes around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPT1-AS1 Gene

Function for TPT1-AS1 Gene

Phenotypes From GWAS Catalog for TPT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPT1-AS1 Gene

Localization for TPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPT1-AS1 Gene

Pathways & Interactions for TPT1-AS1 Gene

SuperPathways for TPT1-AS1 Gene

No Data Available

Interacting Proteins for TPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPT1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TPT1-AS1 Gene

Drugs & Compounds for TPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TPT1-AS1 Gene

mRNA/cDNA for TPT1-AS1 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(15) RNA Central transcripts :

Unigene Clusters for TPT1-AS1 Gene

TPT1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPT1-AS1 Gene

No ASD Table

Relevant External Links for TPT1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TPT1-AS1 Gene:

genes like me logo Genes that share expression patterns with TPT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPT1-AS1 Gene

Orthologs for TPT1-AS1 Gene

Evolution for TPT1-AS1 Gene

Gene Tree for TPT1-AS1 (if available)
Gene Tree for TPT1-AS1 (if available)

No data available for Orthologs for TPT1-AS1 Gene

Paralogs for TPT1-AS1 Gene

No data available for Paralogs for TPT1-AS1 Gene

Variants for TPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPT1-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000018869 -- 45,368,601(+) T/C intron_variant
rs1000071759 -- 45,346,139(+) A/G intron_variant
rs1000135196 -- 45,362,712(+) A/G intron_variant
rs1000269515 -- 45,374,729(+) G/A intron_variant
rs1000322959 -- 45,349,331(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv222e201 CNV deletion 23290073
dgv223e201 CNV deletion 23290073
esv1002945 CNV deletion 20482838
esv2200003 CNV deletion 18987734
esv2662251 CNV deletion 23128226
esv2662623 CNV deletion 23128226
esv2677094 CNV deletion 23128226
esv2747345 CNV deletion 23290073
esv2747346 CNV deletion 23290073
esv29553 CNV gain 19812545
esv3334636 CNV duplication 20981092
esv3400068 CNV duplication 20981092
esv3403190 CNV duplication 20981092
esv3550405 CNV deletion 23714750
esv3550406 CNV deletion 23714750
esv3580625 CNV loss 25503493
esv3631951 CNV loss 21293372
esv3631952 CNV loss 21293372
esv3631953 CNV loss 21293372
esv3631954 CNV gain 21293372
esv3631955 CNV loss 21293372
esv3631956 CNV loss 21293372
nsv1023 CNV insertion 18451855
nsv1046200 CNV gain 25217958
nsv1071098 CNV deletion 25765185
nsv1143589 CNV deletion 24896259
nsv510579 CNV deletion 20534489
nsv951079 CNV deletion 24416366
nsv977234 CNV duplication 23825009
nsv977235 CNV duplication 23825009

Additional Variant Information for TPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPT1-AS1 Gene

Disorders for TPT1-AS1 Gene

Additional Disease Information for TPT1-AS1

No disorders were found for TPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPT1-AS1 Gene

Publications for TPT1-AS1 Gene

  1. LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas. (PMID: 27764782) Wang W … Zhao J (Oncotarget 2016) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TPT1-AS1 Gene

Sources for TPT1-AS1 Gene

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