piR-57204 Gene (RNA Gene)

 

GC18P002910
GIFtS:
4
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Aliases for piR-57204 Gene

Subcategory (RNA class) for piR-57204 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-57204 Gene

  • PiR-57204 161

No data available for External Ids for piR-57204 Gene

Summaries for piR-57204 Gene

GeneCards Summary for piR-57204 Gene

piR-57204 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-57204 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-57204 Gene

Genomics for piR-57204 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-57204 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J002908 Enhancer 0.5 FANTOM5 dbSUPER 600.7 -1.4 -1369 0.1 ZFHX2 EGR2 piR-57204 LPIN2 SMCHD1 EMILIN2 piR-42641
GH18J002909 Enhancer 0.5 Ensembl dbSUPER 600.7 -0.3 -283 1.4 RBFOX2 PAF1 piR-57204 EMILIN2 piR-42641 LPIN2
GH18J002905 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.4 -3383 3.2 HNRNPL GATAD2A TFE3 NFKBIZ POLR2A LARP7 ZIC2 RBFOX2 IKZF2 EZH2 EMILIN2 LPIN2 piR-57204 piR-42641
GH18J002885 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.1 -18115 7.7 TFE3 ZNF512 RFX1 LEF1 IKZF1 JUND MTA2 PHF21A PKNOX1 ZNF24 piR-42641 EMILIN2 ENSG00000252258 piR-57204 LPIN2
GH18J002912 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 +4.4 4358 2.6 ZIC2 RBM22 POLR2A PAF1 SMARCA4 EMILIN2 ENSG00000252258 piR-30366 piR-57204 LPIN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-57204 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-57204 Gene

Genomic Locations for piR-57204 Gene
chr18:2,909,784-2,909,815
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand

Genomic View for piR-57204 Gene

Genes around piR-57204 on UCSC Golden Path with GeneCards custom track
piR-57204 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-57204 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-57204 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-57204 Gene

Proteins for piR-57204 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-57204 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-57204 Gene

Domains & Families for piR-57204 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-57204 Gene

Function for piR-57204 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-57204 Gene

Localization for piR-57204 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-57204 Gene

Pathways & Interactions for piR-57204 Gene

PathCards logo

SuperPathways for piR-57204 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-57204 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-57204 Gene

Drugs & Compounds for piR-57204 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-57204 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-57204 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005AC81B_9606 piRNA 32 1

ENA: DQ590092.1:1..32:ncRNA,

piR-57204 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-57204 Gene

No ASD Table

Relevant External Links for piR-57204 Gene

GeneLoc Exon Structure for
piR-57204

No data available for mRNA/cDNA for piR-57204 Gene

Expression for piR-57204 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-57204 Gene

Orthologs for piR-57204 Gene

No data available for Orthologs and Evolution for piR-57204 Gene

Paralogs for piR-57204 Gene

No data available for Paralogs for piR-57204 Gene

Variants for piR-57204 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-57204 Gene

Disorders for piR-57204 Gene

No disorders were found for piR-57204 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-57204 Gene

Publications for piR-57204 Gene

No publications were found for piR-57204 Gene.

No data available for Mastermind for piR-57204 Gene

Products for piR-57204 Gene

Sources for piR-57204 Gene