Aliases for piR-56480-026 Gene

Data sources for piR-56480-026 Gene:

RNA type for piR-56480-026 Gene

piRNA

Aliases for piR-56480-026 Gene

  • PiR-56480 (ENA)

No data available for External Ids for piR-56480-026 Gene

Summaries for piR-56480-026 Gene

GeneCards Summary for piR-56480-026 Gene

piR-56480-026 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-56480-026 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-56480-026 Gene

Genomics for piR-56480-026 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-56480-026 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J062120 Enhancer 0.7 Ensembl ENCODE 250.7 -0.8 -832 0.8 IKZF1 SOX5 BHLHE40 L3MBTL2 ZNF644 SOX13 TCF7 ENSG00000207123 piR-56480-026 MED13 piR-43106-096 EFCAB3
GH17J062109 Enhancer 1 ENCODE 0.4 -12.4 -12388 0.2 BCLAF1 ZNF207 MYC ZNF654 SSRP1 ZNF592 KLF9 CEBPA NFIC ZIC2 piR-56480-026 piR-43106-096 MED13 EFCAB3
GH17J062111 Enhancer 0.9 Ensembl ENCODE 0.4 -10.3 -10256 1.8 LARP7 REST SIX4 ZNF217 MBD2 ELF1 PAX8 DDX20 ZBTB40 SMARCE1 TBX2-AS1 LINC02875 MED13 piR-56480-026 piR-43106-096 EFCAB3
GH17J062092 Enhancer 1 Ensembl ENCODE 0.3 -28.3 -28266 1.9 BCLAF1 SP1 JUND YY1 BCL11A TRIM22 NR2C1 KMT2B RXRA ZNF511 EFCAB3 ENSG00000239809 RNU7-52P RPS23P7 NACA2 MED13 piR-43106-096 piR-56480-026
GH17J062097 Enhancer 1 Ensembl ENCODE 0.4 -23.2 -23232 2 ZMYM3 CEBPA BCL11A TARDBP TRIM22 IRF4 ZNF316 EBF1 CBFB SMARCA5 piR-43106-096 piR-56480-026 MED13 EFCAB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-56480-026 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-56480-026 Gene

Latest Assembly
chr17:62,122,033-62,122,059
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand

Genomic View for piR-56480-026 Gene

Genes around piR-56480-026 on UCSC Golden Path with GeneCards custom track
piR-56480-026 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-56480-026 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-56480-026 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-56480-026 Gene

Proteins for piR-56480-026 Gene

Post-translational modifications for piR-56480-026 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-56480-026 Gene

Domains & Families for piR-56480-026 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-56480-026 Gene

Function for piR-56480-026 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-56480-026 Gene

Localization for piR-56480-026 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-56480-026 Gene

Pathways & Interactions for piR-56480-026 Gene

PathCards logo

SuperPathways for piR-56480-026 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-56480-026 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-56480-026 Gene

Drugs & Compounds for piR-56480-026 Gene

No Compound Related Data Available

Transcripts for piR-56480-026 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-56480-026 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003C1030_9606 piRNA 27 1

ENA: DQ589368.1:1..27:ncRNA,

piR-56480-026 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-56480-026 Gene

No ASD Table

Relevant External Links for piR-56480-026 Gene

GeneLoc Exon Structure for
piR-56480-026

No data available for mRNA/cDNA for piR-56480-026 Gene

Expression for piR-56480-026 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-56480-026 Gene

Orthologs for piR-56480-026 Gene

No data available for Orthologs and Evolution for piR-56480-026 Gene

Paralogs for piR-56480-026 Gene

No data available for Paralogs for piR-56480-026 Gene

Variants for piR-56480-026 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-56480-026 Gene

Disorders for piR-56480-026 Gene

No disorders were found for piR-56480-026 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-56480-026 Gene

Publications for piR-56480-026 Gene

No publications were found for piR-56480-026 Gene.

No data available for Mastermind for piR-56480-026 Gene

Products for piR-56480-026 Gene

Sources for piR-56480-026 Gene