piR-55783 Gene (RNA Gene)

 

GC16P028549
GIFtS:
3
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Aliases for piR-55783 Gene

Subcategory (RNA class) for piR-55783 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-55783 Gene

  • PiR-55783 161

Previous GeneCards Identifiers for piR-55783 Gene

  • GC16P028499
  • GC16P028501

No data available for External Ids for piR-55783 Gene

Summaries for piR-55783 Gene

GeneCards Summary for piR-55783 Gene

piR-55783 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-55783 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-55783 Gene

Genomics for piR-55783 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-55783 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J028490 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.6 -3574 7.3 SP1 CREB1 GATAD2A PRDM10 ZNF629 REST TFE3 SIX5 LEF1 IKZF1 APOBR CLN3 ENSG00000261832 lnc-CLN3-1 lnc-IL27-1 SULT1A2 ATXN2L ENSG00000260853 SH2B1 SPNS1
GH16J028503 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 +8.7 8658 4.9 HNRNPL GATAD2A CTCF ZBTB33 TFE3 RCOR2 ZNF7 TARDBP JUND LARP7 IL27 SGF29 TUFM SULT1A2 CDC37P1 piR-55783 CLN3 lnc-APOBR-1
GH16J028499 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +2.4 2392 1.2 CREB1 ATF7 RFX1 BMI1 CTBP1 ESRRA ATF2 SREBF1 TUFM SULT1A2 CLN3 piR-55783 lnc-APOBR-1 IL27
GH16J028524 Enhancer 0.9 Ensembl ENCODE 0.3 +27.2 27192 1.6 REST DDX20 SP1 YY1 ZNF341 CTCF ZNF766 NFE2 ZNF316 MEF2D lnc-APOBR-1 SULT1A2 APOBR CLN3 ENSG00000251417 IL27 piR-55783
GH16J028512 Enhancer 0.5 Ensembl 0.4 +15.8 15792 1.2 RXRB IRF2 SAP130 SMAD4 TFAP4 IKZF5 KDM1A ZNF644 TUFM IL27 lnc-APOBR-1 CLN3 piR-55783
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-55783 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-55783 Gene

Genomic Locations for piR-55783 Gene
chr16:28,497,409-28,497,438
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-55783 Gene

Genes around piR-55783 on UCSC Golden Path with GeneCards custom track
piR-55783 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-55783 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-55783 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-55783 Gene

Proteins for piR-55783 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-55783 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-55783 Gene

Domains & Families for piR-55783 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-55783 Gene

Function for piR-55783 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-55783 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-55783 Gene

Localization for piR-55783 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-55783 Gene

Pathways & Interactions for piR-55783 Gene

PathCards logo

SuperPathways for piR-55783 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-55783 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-55783 Gene

Drugs & Compounds for piR-55783 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-55783 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-55783 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000071C8E_9606 piRNA 30 1

ENA: DQ588671.1:1..30:ncRNA,

piR-55783 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-55783 Gene

No ASD Table

Relevant External Links for piR-55783 Gene

GeneLoc Exon Structure for
piR-55783

No data available for mRNA/cDNA for piR-55783 Gene

Expression for piR-55783 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-55783 Gene

Orthologs for piR-55783 Gene

No data available for Orthologs and Evolution for piR-55783 Gene

Paralogs for piR-55783 Gene

No data available for Paralogs for piR-55783 Gene

Variants for piR-55783 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-55783 Gene

Disorders for piR-55783 Gene

No disorders were found for piR-55783 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-55783 Gene

Publications for piR-55783 Gene

No publications were found for piR-55783 Gene.

No data available for Mastermind for piR-55783 Gene

Products for piR-55783 Gene

Sources for piR-55783 Gene