Aliases for piR-55053 Gene

Subcategory (RNA class) for piR-55053 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-55053 Gene

  • PiR-55053 161

No data available for External Ids for piR-55053 Gene

Summaries for piR-55053 Gene

GeneCards Summary for piR-55053 Gene

piR-55053 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-55053 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-55053 Gene

Genomics for piR-55053 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-55053 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J019311 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +38.4 38367 4.9 HNRNPL GATAD2A TEAD4 TFE3 CTCF ZNF692 ZNF174 PRDM1 ZIC2 RBFOX2 SH2D4A CSGALNACT1 LOC105379306 piR-55053 RF00017-6867
GH08J019344 Enhancer 1 Ensembl ENCODE 0.4 +6.2 6214 3.8 GATAD2A CTCF FOXA1 RXRB FOXK2 MNT NFE2 ZNF444 ZNF316 FOXA2 SH2D4A piR-55053 RF00017-6867 LOC102724881 CSGALNACT1
GH08J019357 Enhancer 0.5 Ensembl ENCODE 0.7 -4.6 -4572 1.4 SMARCA4 GATA2 SH2D4A CSGALNACT1 INTS10 piR-55053 ENSG00000279858 RF00017-6867 LOC102724881
GH08J019318 Enhancer 1 Ensembl ENCODE 0.3 +33.2 33188 2.1 GATAD2A CTCF SOX13 ZNF7 RXRB SP1 CEBPA TCF7 FOXA2 YY1 CSGALNACT1 SH2D4A piR-55053 RF00017-6867
GH08J019372 Enhancer 0.7 Ensembl ENCODE 0.4 -19.8 -19794 1.8 CTCF REST RAD21 SMC3 TRIM28 ZNF654 ZNF2 ZNF143 TRIM22 CSGALNACT1 SH2D4A INTS10 ENSG00000279858 piR-55053 RF00017-6867 LOC102724881
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-55053 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-55053 Gene

Genomic Locations for piR-55053 Gene
chr8:19,352,700-19,352,729
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-55053 Gene

Genes around piR-55053 on UCSC Golden Path with GeneCards custom track
piR-55053 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-55053 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-55053 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-55053 Gene

Proteins for piR-55053 Gene

Post-translational modifications for piR-55053 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-55053 Gene

Domains & Families for piR-55053 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-55053 Gene

Function for piR-55053 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-55053 Gene

Localization for piR-55053 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-55053 Gene

Pathways & Interactions for piR-55053 Gene

PathCards logo

SuperPathways for piR-55053 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-55053 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-55053 Gene

Drugs & Compounds for piR-55053 Gene

No Compound Related Data Available

Transcripts for piR-55053 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-55053 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000305A75_9606 piRNA 30 1

ENA: DQ587941.1:1..30:ncRNA,

piR-55053 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-55053 Gene

No ASD Table

Relevant External Links for piR-55053 Gene

GeneLoc Exon Structure for
piR-55053

No data available for mRNA/cDNA for piR-55053 Gene

Expression for piR-55053 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-55053 Gene

Orthologs for piR-55053 Gene

No data available for Orthologs and Evolution for piR-55053 Gene

Paralogs for piR-55053 Gene

No data available for Paralogs for piR-55053 Gene

Variants for piR-55053 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-55053 Gene

Disorders for piR-55053 Gene

No disorders were found for piR-55053 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-55053 Gene

Publications for piR-55053 Gene

No publications were found for piR-55053 Gene.

No data available for Mastermind for piR-55053 Gene

Products for piR-55053 Gene

Sources for piR-55053 Gene