piR-54908 Gene (RNA Gene)

 

GC02M064016
GIFtS:
3
See more...

Aliases for piR-54908 Gene

Subcategory (RNA class) for piR-54908 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-54908 Gene

  • PiR-54908 161

No data available for External Ids for piR-54908 Gene

Summaries for piR-54908 Gene

GeneCards Summary for piR-54908 Gene

piR-54908 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-54908 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-54908 Gene

Genomics for piR-54908 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-54908 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J064017 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -3.3 -3321 3.8 GATAD2A PRDM10 ZNF629 ZNF512 SOX13 IKZF1 NFKBIZ ZNF692 POLR2A BACH1 VPS54 WDPCP MDH1 ENSG00000225889 piR-54908 UGP2
GH02J064007 Enhancer 0.7 Ensembl 0.4 +6.6 6588 4.4 GATAD2A ATF7 PRDM1 CEBPA CEBPB FOXA2 RBM22 JUND ARNT CEBPG WDPCP MDH1 piR-54908 VPS54 piR-50968-062 UGP2
GH02J064001 Enhancer 0.6 Ensembl 0.4 +14.0 13988 1.6 GATAD2A CTCF FOXA2 KAT7 ZBTB25 RAD21 ZNF48 ZNF580 ELF3 SMC3 WDPCP piR-50968-062 piR-54908 VPS54 UGP2
GH02J064012 Enhancer 0.3 FANTOM5 0.7 +3.5 3516 0.1 RBFOX2 PELI1 piR-54908 VPS54 piR-50968-062 UGP2
GH02J064011 Enhancer 0.3 Ensembl 0.7 +3.9 3888 0.2 RBFOX2 piR-54908 VPS54 piR-50968-062 UGP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-54908 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-54908 Gene

Genomic Locations for piR-54908 Gene
chr2:64,015,559-64,015,589
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-54908 Gene

Genes around piR-54908 on UCSC Golden Path with GeneCards custom track
piR-54908 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-54908 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-54908 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-54908 Gene

Proteins for piR-54908 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-54908 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-54908 Gene

Domains & Families for piR-54908 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-54908 Gene

Function for piR-54908 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-54908 Gene

Localization for piR-54908 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-54908 Gene

Pathways & Interactions for piR-54908 Gene

PathCards logo

SuperPathways for piR-54908 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-54908 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-54908 Gene

Drugs & Compounds for piR-54908 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-54908 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-54908 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002BF71B_9606 piRNA 31 1

ENA: DQ587796.1:1..31:ncRNA,

piR-54908 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-54908 Gene

No ASD Table

Relevant External Links for piR-54908 Gene

GeneLoc Exon Structure for
piR-54908

No data available for mRNA/cDNA for piR-54908 Gene

Expression for piR-54908 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-54908 Gene

Orthologs for piR-54908 Gene

No data available for Orthologs and Evolution for piR-54908 Gene

Paralogs for piR-54908 Gene

No data available for Paralogs for piR-54908 Gene

Variants for piR-54908 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-54908 Gene

Disorders for piR-54908 Gene

No disorders were found for piR-54908 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-54908 Gene

Publications for piR-54908 Gene

No publications were found for piR-54908 Gene.

No data available for Mastermind for piR-54908 Gene

Products for piR-54908 Gene

Sources for piR-54908 Gene