piR-54787 Gene (RNA Gene)

 

GC18M079920
GIFtS:
3
See more...

Aliases for piR-54787 Gene

Subcategory (RNA class) for piR-54787 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-54787 Gene

  • PiR-54787 161

No data available for External Ids for piR-54787 Gene

Summaries for piR-54787 Gene

GeneCards Summary for piR-54787 Gene

piR-54787 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-54787 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-54787 Gene

Genomics for piR-54787 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-54787 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J079949 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -32.1 -32133 5 SP1 HNRNPL CREB1 PRDM10 BACH1 JUND LARP7 ZNF143 RBFOX2 POLR2A SLC66A2 lnc-HSBP1L1-1 RBFADN HSBP1L1 TXNL4A RBFA piR-54787 KCNG2
GH18J079933 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -15.1 -15138 1.7 GATAD2A CTCF TFE3 SOX13 IKZF1 NFKBIZ RCOR2 PRDM1 RXRB NR2C1 RBFADN ENSG00000267251 SLC66A2 piR-54787 KCNG2
GH18J079950 Enhancer 1 ENCODE dbSUPER 0.3 -28.8 -28816 0.2 GATAD2A RXRB IRF2 SP1 CEBPA SOX13 FOXA2 ATF3 YY1 ZBTB33 SLC66A2 piR-54787 KCNG2
GH18J079936 Enhancer 0.7 dbSUPER 0.4 -17.7 -17746 0.7 GATAD2A RXRB SP1 CEBPA KMT2B FOXA2 YY1 CREB1 JUND CREM RBFADN SLC66A2 piR-54787 KCNG2
GH18J079943 Enhancer 0.9 ENCODE dbSUPER 0.3 -25.5 -25458 1.9 RELA ZIC2 ZNF600 PKNOX1 SCRT2 RUNX3 ZBTB10 TCF12 SCRT1 NBN RBFA HSBP1L1 RBFADN SLC66A2 piR-54787 KCNG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-54787 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-54787 Gene

Genomic Locations for piR-54787 Gene
chr18:79,919,350-79,919,380
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-54787 Gene

Genes around piR-54787 on UCSC Golden Path with GeneCards custom track
piR-54787 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-54787 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-54787 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-54787 Gene

Proteins for piR-54787 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-54787 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-54787 Gene

Domains & Families for piR-54787 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-54787 Gene

Function for piR-54787 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-54787 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-54787 Gene

Localization for piR-54787 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-54787 Gene

Pathways & Interactions for piR-54787 Gene

PathCards logo

SuperPathways for piR-54787 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-54787 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-54787 Gene

Drugs & Compounds for piR-54787 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-54787 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-54787 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057C06A_9606 piRNA 31 1

ENA: DQ587675.1:1..31:ncRNA,

piR-54787 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-54787 Gene

No ASD Table

Relevant External Links for piR-54787 Gene

GeneLoc Exon Structure for
piR-54787

No data available for mRNA/cDNA for piR-54787 Gene

Expression for piR-54787 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-54787 Gene

Orthologs for piR-54787 Gene

No data available for Orthologs and Evolution for piR-54787 Gene

Paralogs for piR-54787 Gene

No data available for Paralogs for piR-54787 Gene

Variants for piR-54787 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-54787 Gene

Disorders for piR-54787 Gene

No disorders were found for piR-54787 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-54787 Gene

Publications for piR-54787 Gene

No publications were found for piR-54787 Gene.

No data available for Mastermind for piR-54787 Gene

Products for piR-54787 Gene

Sources for piR-54787 Gene