Aliases for piR-54720 Gene

Data sources for piR-54720 Gene:

RNA type for piR-54720 Gene

piRNA

Aliases for piR-54720 Gene

  • PiR-54720 (ENA)

No data available for External Ids for piR-54720 Gene

Summaries for piR-54720 Gene

GeneCards Summary for piR-54720 Gene

piR-54720 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-54720 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-54720 Gene

Genomics for piR-54720 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-54720 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J071817 Enhancer 0.5 ENCODE dbSUPER 250.7 +0.2 185 3.2 PRDM10 SP1 lnc-VSIR-1 piR-54720 VSIR CDH23 PSAP ANAPC16 HSALNG0078727
GH10J071812 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.7 6669 1.7 ZNF654 MYC SSRP1 NFIC ZIC2 MXD4 CTCF REST TRIM22 ZNF639 VSIR piR-54720 HSALNG0078727 PSAP CDH23
GH10J071805 Enhancer 0.9 ENCODE dbSUPER 0.4 +13.0 13030 0.9 IKZF1 POLR2A SP2 ZNF316 NFE2 PRDM10 FOXK2 ZNF384 MAFG ZEB2 PSAP HSALNG0078727 piR-54720 VSIR CDH23
GH10J071815 Enhancer 0.5 dbSUPER 0.7 +2.9 2948 1.1 RBM22 SUPT5H ZBTB33 RFX1 POLR2A POLR2B VSIR CDH23 PSAP lnc-VSIR-1 piR-54720 HSALNG0078727
GH10J071797 Enhancer 0.9 ENCODE 0.4 +21.2 21189 1.5 MYC NCOR1 IKZF1 ZNF592 NFIC REST MBD2 MNT ARNT NBN VSIR HSALNG0078727 piR-54720 PSAP CDH23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-54720 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-54720 Gene

Latest Assembly
chr10:71,819,069-71,819,098
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-54720 Gene

Genes around piR-54720 on UCSC Golden Path with GeneCards custom track
piR-54720 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-54720 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-54720 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-54720 Gene

Proteins for piR-54720 Gene

Post-translational modifications for piR-54720 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-54720 Gene

Domains & Families for piR-54720 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-54720 Gene

Function for piR-54720 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-54720 Gene

Localization for piR-54720 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-54720 Gene

Pathways & Interactions for piR-54720 Gene

PathCards logo

SuperPathways for piR-54720 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-54720 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-54720 Gene

Drugs & Compounds for piR-54720 Gene

No Compound Related Data Available

Transcripts for piR-54720 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-54720 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000BF565_9606 piRNA 30 1

ENA: DQ587608.1:1..30:ncRNA,

piR-54720 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-54720 Gene

No ASD Table

Relevant External Links for piR-54720 Gene

GeneLoc Exon Structure for
piR-54720

No data available for mRNA/cDNA for piR-54720 Gene

Expression for piR-54720 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-54720 Gene

Orthologs for piR-54720 Gene

No data available for Orthologs and Evolution for piR-54720 Gene

Paralogs for piR-54720 Gene

No data available for Paralogs for piR-54720 Gene

Variants for piR-54720 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-54720 Gene

Disorders for piR-54720 Gene

No disorders were found for piR-54720 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-54720 Gene

Publications for piR-54720 Gene

No publications were found for piR-54720 Gene.

No data available for Mastermind for piR-54720 Gene

Products for piR-54720 Gene

Sources for piR-54720 Gene