piR-54514 Gene (RNA Gene)

 

GC01P180178
GIFtS:
2
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Aliases for piR-54514 Gene

Subcategory (RNA class) for piR-54514 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-54514 Gene

  • PiR-54514 161

No data available for External Ids for piR-54514 Gene

Summaries for piR-54514 Gene

GeneCards Summary for piR-54514 Gene

piR-54514 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-54514 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-54514 Gene

Genomics for piR-54514 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-54514 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J180178 Enhancer 0.8 ENCODE dbSUPER 600.7 +0.2 222 0.1 CTCF JUND REST RAD21 TRIM22 ZNF444 SMC3 DEK GATA3 STAT1 piR-54514 QSOX1 TOR1AIP1 TOR1AIP2 piR-56590 LHX4
GH01J180177 Enhancer 0.5 Ensembl dbSUPER 600.7 -0.8 -808 0.4 WT1 GLIS1 piR-54514 QSOX1 TOR1AIP1 TOR1AIP2 piR-34309 LHX4
GH01J180173 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -4.7 -4729 1.3 POLR2A SMARCA4 QSOX1 TOR1AIP2 TOR1AIP1 piR-54514 piR-34309 LHX4
GH01J180165 Enhancer 1.1 ENCODE dbSUPER 0.4 -10.5 -10500 6 HNRNPL CREB1 CTCF PRDM10 ZNF692 ZHX2 JUND ZIC2 PKNOX1 PATZ1 piR-34309 QSOX1 piR-54514 LHX4
GH01J180180 Enhancer 0.6 dbSUPER 0.7 +3.9 3934 4.1 CTCF ZIC2 PKNOX1 DPF2 ZNF316 MAFG MAFK CREM SIN3B MAFF QSOX1 LHX4 TOR1AIP1 TOR1AIP2 piR-54514 piR-56590 lnc-ACBD6-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-54514 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-54514 Gene

Genomic Locations for piR-54514 Gene
chr1:180,178,809-180,178,838
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-54514 Gene

Genes around piR-54514 on UCSC Golden Path with GeneCards custom track
piR-54514 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-54514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-54514 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-54514 Gene

Proteins for piR-54514 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-54514 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-54514 Gene

Domains & Families for piR-54514 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-54514 Gene

Function for piR-54514 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-54514 Gene

Localization for piR-54514 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-54514 Gene

Pathways & Interactions for piR-54514 Gene

PathCards logo

SuperPathways for piR-54514 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-54514 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-54514 Gene

Drugs & Compounds for piR-54514 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-54514 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-54514 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014D503_9606 piRNA 30 1

ENA: DQ587402.1:1..30:ncRNA,

piR-54514 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-54514 Gene

No ASD Table

Relevant External Links for piR-54514 Gene

GeneLoc Exon Structure for
piR-54514

No data available for mRNA/cDNA for piR-54514 Gene

Expression for piR-54514 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-54514 Gene

Orthologs for piR-54514 Gene

No data available for Orthologs and Evolution for piR-54514 Gene

Paralogs for piR-54514 Gene

No data available for Paralogs for piR-54514 Gene

Variants for piR-54514 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-54514 Gene

Disorders for piR-54514 Gene

No disorders were found for piR-54514 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-54514 Gene

Publications for piR-54514 Gene

No publications were found for piR-54514 Gene.

No data available for Mastermind for piR-54514 Gene

Products for piR-54514 Gene

Sources for piR-54514 Gene