piR-54462 Gene (RNA Gene)

 

GC01M109507
GIFtS:
2
See more...

Aliases for piR-54462 Gene

Data sources for piR-54462 Gene:

Subcategory (RNA class) for piR-54462 Gene

piRNA

Aliases for piR-54462 Gene

  • PiR-54462 (ENA)

No data available for External Ids for piR-54462 Gene

Summaries for piR-54462 Gene

GeneCards Summary for piR-54462 Gene

piR-54462 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-54462 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-54462 Gene

Genomics for piR-54462 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-54462 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J109509 Promoter 0.4 Ensembl 250.7 -1.5 -1489 0.2 CREB1 piR-54462 piR-33881 AMIGO1 CYB561D1
GH01J109493 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +12.5 12533 2.2 CHD2 TBP ZBTB10 MXD4 MNT BRCA1 SMAD5 IRF2 MBD2 ZNF217 CYB561D1 ENSG00000258634 PRPF38B STRIP1 SYPL2 RPL17P7 ENSG00000273373 ENSG00000228665 RBM15 ATXN7L2
GH01J109497 Enhancer 0.8 ENCODE 0.4 +6.3 6325 6 ZSCAN16 IKZF1 ZNF217 CTCF ELF1 ZIC2 SIN3A REST VEZF1 TRIM22 AMIGO1 SYPL2 GPR61 ENSG00000254942 CYB561D1 piR-54462
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-54462 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-54462 Gene

Latest Assembly
chr1:109,506,783-109,506,812
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-54462 Gene

Genes around piR-54462 on UCSC Golden Path with GeneCards custom track
piR-54462 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-54462 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-54462 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-54462 Gene

Proteins for piR-54462 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for piR-54462 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-54462 Gene

Domains & Families for piR-54462 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-54462 Gene

Function for piR-54462 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-54462 Gene

Localization for piR-54462 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-54462 Gene

Pathways & Interactions for piR-54462 Gene

PathCards logo

SuperPathways for piR-54462 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-54462 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-54462 Gene

Drugs & Compounds for piR-54462 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for piR-54462 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-54462 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000164A17_9606 piRNA 30 1

ENA: DQ587350.1:1..30:ncRNA,

piR-54462 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-54462 Gene

No ASD Table

Relevant External Links for piR-54462 Gene

GeneLoc Exon Structure for
piR-54462

No data available for mRNA/cDNA for piR-54462 Gene

Expression for piR-54462 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-54462 Gene

Orthologs for piR-54462 Gene

No data available for Orthologs and Evolution for piR-54462 Gene

Paralogs for piR-54462 Gene

No data available for Paralogs for piR-54462 Gene

Variants for piR-54462 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-54462 Gene

Disorders for piR-54462 Gene

No disorders were found for piR-54462 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-54462 Gene

Publications for piR-54462 Gene

No publications were found for piR-54462 Gene.

No data available for Mastermind for piR-54462 Gene

Products for piR-54462 Gene

Sources for piR-54462 Gene