Aliases for piR-53942 Gene

Data sources for piR-53942 Gene:

RNA type for piR-53942 Gene

piRNA

Aliases for piR-53942 Gene

  • PiR-53942 (ENA)

No data available for External Ids for piR-53942 Gene

Summaries for piR-53942 Gene

GeneCards Summary for piR-53942 Gene

piR-53942 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-53942 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-53942 Gene

Genomics for piR-53942 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-53942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J129128 Enhancer 0.3 dbSUPER 250.7 -0.1 -53 1 MZF1 piR-53942 CRAT ENSG00000234055 NTMT1 C9orf50 piR-33196 ENSG00000235007 PTPA
GH09J129131 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +2.8 2782 0.8 BCLAF1 ZNF207 ZNF654 MYC BRCA1 CTCF REST CEBPB DEK TRIM22 CRAT ENSG00000234055 URM1 NTMT1 C9orf50 NUP188 piR-53942 ENSG00000235007 piR-54173 PTPA
GH09J129124 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -2.8 -2804 3.2 POLR2A ZIC2 CEBPB SIN3A EP300 EBF1 JUND HNF4A TAF1 JUNB CRAT ENSG00000268707 ENSG00000234055 NTMT1 C9orf50 piR-33196 piR-53942 ENSG00000235007 PTPA
GH09J129132 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 +4.5 4508 1.6 TCF7L2 ZNF664 ZNF16 CRAT CIZ1 NUP188 GOLGA2 C9orf50 NTMT1 CERCAM piR-53942 piR-54173 ENSG00000235007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-53942 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-53942 Gene

Latest Assembly
chr9:129,129,019-129,129,049
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for piR-53942 Gene

Genes around piR-53942 on UCSC Golden Path with GeneCards custom track
piR-53942 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-53942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-53942 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-53942 Gene

Proteins for piR-53942 Gene

Post-translational modifications for piR-53942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-53942 Gene

Domains & Families for piR-53942 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-53942 Gene

Function for piR-53942 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-53942 Gene

Localization for piR-53942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-53942 Gene

Pathways & Interactions for piR-53942 Gene

PathCards logo

SuperPathways for piR-53942 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-53942 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-53942 Gene

Drugs & Compounds for piR-53942 Gene

No Compound Related Data Available

Transcripts for piR-53942 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-53942 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000257DFD_9606 piRNA 31 1

ENA: DQ586830.1:1..31:ncRNA,

piR-53942 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-53942 Gene

No ASD Table

Relevant External Links for piR-53942 Gene

GeneLoc Exon Structure for
piR-53942

No data available for mRNA/cDNA for piR-53942 Gene

Expression for piR-53942 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-53942 Gene

Orthologs for piR-53942 Gene

No data available for Orthologs and Evolution for piR-53942 Gene

Paralogs for piR-53942 Gene

No data available for Paralogs for piR-53942 Gene

Variants for piR-53942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-53942 Gene

Disorders for piR-53942 Gene

No disorders were found for piR-53942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-53942 Gene

Publications for piR-53942 Gene

No publications were found for piR-53942 Gene.

No data available for Mastermind for piR-53942 Gene

Products for piR-53942 Gene

Sources for piR-53942 Gene