piR-50475 Gene (RNA Gene)

 

GC09P115218
GIFtS:
3
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Aliases for piR-50475 Gene

Subcategory (RNA class) for piR-50475 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-50475 Gene

  • PiR-50475 161

Previous GeneCards Identifiers for piR-50475 Gene

  • GC09P114592
  • GC09P114785

No data available for External Ids for piR-50475 Gene

Summaries for piR-50475 Gene

GeneCards Summary for piR-50475 Gene

piR-50475 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-50475 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-50475 Gene

Genomics for piR-50475 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-50475 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J113118 Enhancer 0.2 Ensembl 600.7 -0.9 -905 1.4 piR-30212-002 piR-35818 piR-30525-002 piR-30548-002 piR-30700-002 piR-30741-002 piR-36555-002 piR-33126-002 piR-31126-002 piR-31241-002
GH09J113138 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +19.9 19928 1.7 GATAD2A TFE3 SOX13 RCOR2 RXRB IRF2 PBX2 CEBPA TCF7 TGIF2 FAM225B ALAD ZNF883 SLC31A2 piR-50475 ZFP37 RF00017-7837
GH09J113131 Enhancer 0.9 FANTOM5 dbSUPER 0.4 +12.2 12219 0.4 REST ZNF766 TGIF2 HDAC2 E2F5 ZNF316 MAFF AFF1 MAFK MAFG SLC31A2 FKBP15 SLC31A1 PRPF4 CDC26 FAM225B HDHD3 RGS3 SNX30 piR-50475
GH09J113137 Enhancer 0.9 ENCODE dbSUPER 0.4 +18.3 18292 1 GATAD2A FOXA1 CEBPA SOX13 CTBP1 ATF3 YY1 PKNOX1 ZNF217 GATA3 SLC31A1 FKBP15 CDC26 PRPF4 HDHD3 SLC31A2 piR-50475 ZFP37 RF00017-7837
GH09J113125 Enhancer 0.5 FANTOM5 Ensembl 0.4 +6.1 6095 1.4 STAT1 SLC31A2 SLC46A2 FAM225B SNX30 RGS3 piR-50475 ZFP37 RF00017-7837
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-50475 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-50475 Gene

Genomic Locations for piR-50475 Gene
chr9:113,119,606-113,119,630
(GRCh38/hg38)
Size:
25 bases
Orientation:
Plus strand

Genomic View for piR-50475 Gene

Genes around piR-50475 on UCSC Golden Path with GeneCards custom track
piR-50475 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-50475 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-50475 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-50475 Gene

Proteins for piR-50475 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-50475 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-50475 Gene

Domains & Families for piR-50475 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-50475 Gene

Function for piR-50475 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-50475 Gene

Localization for piR-50475 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-50475 Gene

Pathways & Interactions for piR-50475 Gene

PathCards logo

SuperPathways for piR-50475 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-50475 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-50475 Gene

Drugs & Compounds for piR-50475 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-50475 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-50475 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002B6886_9606 piRNA 25 1

ENA: DQ583363.1:1..26:ncRNA,

piR-50475 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-50475 Gene

No ASD Table

Relevant External Links for piR-50475 Gene

GeneLoc Exon Structure for
piR-50475

No data available for mRNA/cDNA for piR-50475 Gene

Expression for piR-50475 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-50475 Gene

Orthologs for piR-50475 Gene

No data available for Orthologs and Evolution for piR-50475 Gene

Paralogs for piR-50475 Gene

No data available for Paralogs for piR-50475 Gene

Variants for piR-50475 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-50475 Gene

Disorders for piR-50475 Gene

No disorders were found for piR-50475 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-50475 Gene

Publications for piR-50475 Gene

No publications were found for piR-50475 Gene.

No data available for Mastermind for piR-50475 Gene

Products for piR-50475 Gene

Sources for piR-50475 Gene