piR-50444-089 Gene (RNA Gene)

 

GC12P123207
GIFtS:
3
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Aliases for piR-50444-089 Gene

Data sources for piR-50444-089 Gene:

Subcategory (RNA class) for piR-50444-089 Gene

piRNA

Aliases for piR-50444-089 Gene

  • PiR-50444 (ENA)

Previous GeneCards Identifiers for piR-50444-089 Gene

  • GC12P122567
  • GC12P122765
  • GC12P122969

No data available for External Ids for piR-50444-089 Gene

Summaries for piR-50444-089 Gene

GeneCards Summary for piR-50444-089 Gene

piR-50444-089 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-50444-089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-50444-089 Gene

Genomics for piR-50444-089 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-50444-089 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J121204 Enhancer 0.7 FANTOM5 Ensembl 250.7 -0.2 -178 2.2 ZBTB33 MLLT1 AFF1 PRDM1 ZNF600 piR-50444-089 P2RX4 P2RX7 CAMKK2 OASL LOC105370032 lnc-CAMKK2-6 ENSG00000286248 lnc-CAMKK2-1
GH12J121202 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 -2.6 -2578 1.8 FEZF1 CEBPA HES1 ZEB1 ZNF610 ARNT ZNF639 NBN SMAD4 KLF7 P2RX4 CABP1 piR-50444-089 LOC105370032 lnc-CAMKK2-6 ENSG00000286248 P2RX7 lnc-CAMKK2-1
GH12J121196 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -8.1 -8069 1.5 IKZF1 GABPA SPI1 BHLHE40 ATF1 POLR2A MAX ZBTB33 L3MBTL2 ZMYM3 P2RX4 P2RX7 CAMKK2 ACADS ENSG00000256569 OASL ENSG00000286248 piR-50444-089 lnc-CAMKK2-6 LOC105370032
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-50444-089 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-50444-089 Gene

Latest Assembly
chr12:121,205,279-121,205,306
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand

Genomic View for piR-50444-089 Gene

Genes around piR-50444-089 on UCSC Golden Path with GeneCards custom track
piR-50444-089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-50444-089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-50444-089 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-50444-089 Gene

Proteins for piR-50444-089 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for piR-50444-089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-50444-089 Gene

Domains & Families for piR-50444-089 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-50444-089 Gene

Function for piR-50444-089 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-50444-089 Gene

Localization for piR-50444-089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-50444-089 Gene

Pathways & Interactions for piR-50444-089 Gene

PathCards logo

SuperPathways for piR-50444-089 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-50444-089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-50444-089 Gene

Drugs & Compounds for piR-50444-089 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for piR-50444-089 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-50444-089 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000118350_9606 piRNA 28 1

ENA: DQ583332.1:1..28:ncRNA,

piR-50444-089 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-50444-089 Gene

No ASD Table

Relevant External Links for piR-50444-089 Gene

GeneLoc Exon Structure for
piR-50444-089

No data available for mRNA/cDNA for piR-50444-089 Gene

Expression for piR-50444-089 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-50444-089 Gene

Orthologs for piR-50444-089 Gene

No data available for Orthologs and Evolution for piR-50444-089 Gene

Paralogs for piR-50444-089 Gene

No data available for Paralogs for piR-50444-089 Gene

Variants for piR-50444-089 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-50444-089 Gene

Disorders for piR-50444-089 Gene

No disorders were found for piR-50444-089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-50444-089 Gene

Publications for piR-50444-089 Gene

No publications were found for piR-50444-089 Gene.

No data available for Mastermind for piR-50444-089 Gene

Products for piR-50444-089 Gene

Sources for piR-50444-089 Gene