Aliases for piR-49550 Gene

Subcategory (RNA class) for piR-49550 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for piR-49550 Gene

  • PiR-49550 166

No data available for External Ids for piR-49550 Gene

Summaries for piR-49550 Gene

GeneCards Summary for piR-49550 Gene

piR-49550 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-49550 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-49550 Gene

Genomics for piR-49550 Gene

GeneHancer (GH) Regulatory Elements for piR-49550 Gene

Promoters and enhancers for piR-49550 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J042720 Enhancer 0.6 FANTOM5 Ensembl 750.6 +0.4 431 0.4 PRDM1 ZKSCAN8 ZFHX2 ZFP37 piR-49550 PRPH2 piR-47828 RF00017-5547
GH06J042721 Enhancer 0.6 Ensembl 750.6 -0.2 -182 0.4 ZKSCAN8 SP7 PRDM1 ZNF792 OSR2 FOXA2 KLF8 ZFHX2 FOSL2 FOS PRPH2 piR-49550 RF00017-5547
GH06J042719 Enhancer 0.4 Ensembl 750.6 +1.7 1717 0.2 HLF SMAD5 ADNP piR-49550 PRPH2 piR-47828 RF00017-5547
GH06J042722 Promoter 0.3 EPDnew 750.6 -1.6 -1599 0.1 PRPH2 piR-49550 RF00017-5547
GH06J042710 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.4 +10.5 10517 1.4 SMARCE1 SP1 EGR1 RFX1 LEF1 FOXA2 MEF2D IKZF1 VEZF1 PRPH2 RNU6-890P RPL7L1 KLC4 RN7SL403P CUL7 piR-47828 piR-49550 RF00017-5547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-49550 on UCSC Golden Path with GeneCards custom track

Genomic Locations for piR-49550 Gene

Genomic Locations for piR-49550 Gene
chr6:42,720,989-42,721,018
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-49550 Gene

Genes around piR-49550 on UCSC Golden Path with GeneCards custom track

piR-49550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-49550 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-49550 Gene

Proteins for piR-49550 Gene

Post-translational modifications for piR-49550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-49550 Gene

Domains & Families for piR-49550 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-49550 Gene

Function for piR-49550 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-49550 Gene

Localization for piR-49550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-49550 Gene

Pathways & Interactions for piR-49550 Gene

PathCards logo

SuperPathways for piR-49550 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-49550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for piR-49550 Gene

Drugs & Compounds for piR-49550 Gene

No Compound Related Data Available

Transcripts for piR-49550 Gene

mRNA/cDNA for piR-49550 Gene

(1) RNACentral transcripts :
(1) ENA transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for piR-49550 Gene

No ASD Table

Relevant External Links for piR-49550 Gene

GeneLoc Exon Structure for
piR-49550

Expression for piR-49550 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-49550 Gene

Orthologs for piR-49550 Gene

No data available for Orthologs and Evolution for piR-49550 Gene

Paralogs for piR-49550 Gene

No data available for Paralogs for piR-49550 Gene

Variants for piR-49550 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-49550 Gene

Disorders for piR-49550 Gene

No disorders were found for piR-49550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-49550 Gene

Publications for piR-49550 Gene

No publications were found for piR-49550 Gene.

No data available for External Links for piR-49550 Gene

Products for piR-49550 Gene

Sources for piR-49550 Gene