Aliases for piR-49400-061 Gene

Data sources for piR-49400-061 Gene:

RNA type for piR-49400-061 Gene

piRNA

Aliases for piR-49400-061 Gene

  • PiR-49400 (ENA)

No data available for External Ids for piR-49400-061 Gene

Summaries for piR-49400-061 Gene

GeneCards Summary for piR-49400-061 Gene

piR-49400-061 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-49400-061 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-49400-061 Gene

Genomics for piR-49400-061 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-49400-061 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J177407 Enhancer 0.2 FANTOM5 250.7 0.0 -43 0.3 piR-32452-002 piR-49400-061 lnc-NEIL3-1 AGA NEIL3
GH04J177393 Enhancer 0.9 Ensembl ENCODE 0.4 -15.1 -15069 1.6 CEBPA THAP11 FOXA2 RXRA ETV4 MIER3 RARA ZBTB33 FOXP1 SOX5 AGA ENSG00000250131 ENSG00000249008 lnc-NEIL3-1 piR-49400-061 NEIL3
GH04J177403 Enhancer 0.5 Ensembl 0.7 -4.3 -4253 1.2 ETV1 CAVIN1 PTTG1 NR4A1 ZNF740 GTF2A2 AGA ENSG00000250131 piR-49400-061 lnc-NEIL3-1 NEIL3
GH04J177391 Enhancer 0.3 Ensembl 0.4 -16.5 -16469 0.4 EGR2 ZGPAT AGA ENSG00000250131 ENSG00000249008 lnc-NEIL3-1 piR-49400-061 NEIL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-49400-061 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-49400-061 Gene

Latest Assembly
chr4:177,408,070-177,408,100
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for piR-49400-061 Gene

Genes around piR-49400-061 on UCSC Golden Path with GeneCards custom track
piR-49400-061 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-49400-061 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-49400-061 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-49400-061 Gene

Proteins for piR-49400-061 Gene

Post-translational modifications for piR-49400-061 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-49400-061 Gene

Domains & Families for piR-49400-061 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-49400-061 Gene

Function for piR-49400-061 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-49400-061 Gene

Localization for piR-49400-061 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-49400-061 Gene

Pathways & Interactions for piR-49400-061 Gene

PathCards logo

SuperPathways for piR-49400-061 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-49400-061 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-49400-061 Gene

Drugs & Compounds for piR-49400-061 Gene

No Compound Related Data Available

Transcripts for piR-49400-061 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-49400-061 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000175943_9606 piRNA 30 1

ENA: DQ581288.1:1..30:ncRNA,

piR-49400-061 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-49400-061 Gene

No ASD Table

Relevant External Links for piR-49400-061 Gene

GeneLoc Exon Structure for
piR-49400-061

No data available for mRNA/cDNA for piR-49400-061 Gene

Expression for piR-49400-061 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-49400-061 Gene

Orthologs for piR-49400-061 Gene

No data available for Orthologs and Evolution for piR-49400-061 Gene

Paralogs for piR-49400-061 Gene

No data available for Paralogs for piR-49400-061 Gene

Variants for piR-49400-061 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-49400-061 Gene

Disorders for piR-49400-061 Gene

No disorders were found for piR-49400-061 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-49400-061 Gene

Publications for piR-49400-061 Gene

No publications were found for piR-49400-061 Gene.

No data available for Mastermind for piR-49400-061 Gene

Products for piR-49400-061 Gene

Sources for piR-49400-061 Gene