piR-48687 Gene (RNA Gene)

 

GC12M122867
GIFtS:
3
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Aliases for piR-48687 Gene

Subcategory (RNA class) for piR-48687 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-48687 Gene

  • PiR-48687 161

No data available for External Ids for piR-48687 Gene

Summaries for piR-48687 Gene

GeneCards Summary for piR-48687 Gene

piR-48687 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48687 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48687 Gene

Genomics for piR-48687 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-48687 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J122866 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.5 -1500 2.7 HNRNPL GATAD2A CTCF POLR2A RXRB REST IRF2 SP1 ZNF600 CEBPA piR-46783 piR-48687 VPS37B HIP1R CCDC62 PITPNM2 B3GNT4 ENSG00000256152
GH12J122865 Enhancer 0.9 ENCODE dbSUPER 600.7 +0.3 307 0.4 HNRNPL REST CTCF POLR2A PKNOX1 SP1 SCRT2 MNT SMARCA5 YY1 ENSG00000256152 piR-48687 VPS37B HIP1R CCDC62
GH12J122864 Enhancer 0.6 Ensembl dbSUPER 600.7 +1.6 1568 0.2 SCRT2 POLR2A ZBED1 SCRT1 SUPT5H POLR2B ENSG00000256152 lnc-VPS37B-1 piR-48687 VPS37B HIP1R CCDC62
GH12J122867 Enhancer 0.5 ENCODE dbSUPER 600.7 +1.1 1091 0.4 POLR2A POLR2B ENSG00000256152 lnc-VPS37B-1 piR-48687 VPS37B HIP1R CCDC62
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48687 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-48687 Gene

Genomic Locations for piR-48687 Gene
chr12:122,866,240-122,866,269
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-48687 Gene

Genes around piR-48687 on UCSC Golden Path with GeneCards custom track
piR-48687 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-48687 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48687 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48687 Gene

Proteins for piR-48687 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-48687 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48687 Gene

Domains & Families for piR-48687 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48687 Gene

Function for piR-48687 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48687 Gene

Localization for piR-48687 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48687 Gene

Pathways & Interactions for piR-48687 Gene

PathCards logo

SuperPathways for piR-48687 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48687 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-48687 Gene

Drugs & Compounds for piR-48687 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-48687 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-48687 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000245BB0_9606 piRNA 30 1

ENA: DQ580575.1:1..30:ncRNA,

piR-48687 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48687 Gene

No ASD Table

Relevant External Links for piR-48687 Gene

GeneLoc Exon Structure for
piR-48687

No data available for mRNA/cDNA for piR-48687 Gene

Expression for piR-48687 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48687 Gene

Orthologs for piR-48687 Gene

No data available for Orthologs and Evolution for piR-48687 Gene

Paralogs for piR-48687 Gene

No data available for Paralogs for piR-48687 Gene

Variants for piR-48687 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48687 Gene

Disorders for piR-48687 Gene

No disorders were found for piR-48687 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48687 Gene

Publications for piR-48687 Gene

No publications were found for piR-48687 Gene.

No data available for Mastermind for piR-48687 Gene

Products for piR-48687 Gene

Sources for piR-48687 Gene