piR-48594 Gene (RNA Gene)

 

GC01P003241
GIFtS:
3
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Aliases for piR-48594 Gene

Subcategory (RNA class) for piR-48594 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-48594 Gene

  • PiR-48594 161

No data available for External Ids for piR-48594 Gene

Summaries for piR-48594 Gene

GeneCards Summary for piR-48594 Gene

piR-48594 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48594 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48594 Gene

Genomics for piR-48594 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-48594 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J003237 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 -0.8 -755 1.8 HNRNPL GATAD2A RBFOX2 RXRB FOXK2 SOX13 ZBTB26 FOXA2 ZBTB25 KDM6A piR-48594 HSALNG0000314 PRDM16 ARHGEF16
GH01J003240 Enhancer 0.6 CraniofacialAtlas dbSUPER 600.7 +1.7 1702 1 MGA ZNF316 NR2C2 YY1 L3MBTL2 NR2C1 piR-48594 piR-51472 PRDM16 ARHGEF16
GH01J003217 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -18.7 -18682 6.5 GATAD2A ZIC2 RBFOX2 GABPA MNT SOX13 TAF1 MAFF MAFK CREM HSALNG0000314 PEX10 PRDM16 ARHGEF16 piR-48594
GH01J003236 Enhancer 0.8 Ensembl CraniofacialAtlas dbSUPER 0.7 -3.1 -3134 1.4 PKNOX1 PRDM10 GLIS1 MEIS2 piR-48594 HSALNG0000314 PRDM16 ARHGEF16
GH01J003231 Enhancer 0.4 dbSUPER 0.4 -7.7 -7670 0.7 UBTF SMAD4 RARA EZH2 piR-48594 HSALNG0000314 PRDM16 ARHGEF16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48594 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-48594 Gene

Genomic Locations for piR-48594 Gene
chr1:3,239,235-3,239,264
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-48594 Gene

Genes around piR-48594 on UCSC Golden Path with GeneCards custom track
piR-48594 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-48594 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48594 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48594 Gene

Proteins for piR-48594 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-48594 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48594 Gene

Domains & Families for piR-48594 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48594 Gene

Function for piR-48594 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48594 Gene

Localization for piR-48594 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48594 Gene

Pathways & Interactions for piR-48594 Gene

PathCards logo

SuperPathways for piR-48594 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48594 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-48594 Gene

Drugs & Compounds for piR-48594 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-48594 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-48594 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004D9F36_9606 piRNA 30 1

ENA: DQ580482.1:1..30:ncRNA,

piR-48594 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48594 Gene

No ASD Table

Relevant External Links for piR-48594 Gene

GeneLoc Exon Structure for
piR-48594

No data available for mRNA/cDNA for piR-48594 Gene

Expression for piR-48594 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48594 Gene

Orthologs for piR-48594 Gene

No data available for Orthologs and Evolution for piR-48594 Gene

Paralogs for piR-48594 Gene

No data available for Paralogs for piR-48594 Gene

Variants for piR-48594 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48594 Gene

Disorders for piR-48594 Gene

No disorders were found for piR-48594 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48594 Gene

Publications for piR-48594 Gene

No publications were found for piR-48594 Gene.

No data available for Mastermind for piR-48594 Gene

Products for piR-48594 Gene

Sources for piR-48594 Gene