piR-48525 Gene (RNA Gene)

 

GC12M027244
GIFtS:
4
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Aliases for piR-48525 Gene

Subcategory (RNA class) for piR-48525 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-48525 Gene

  • PiR-48525 161

No data available for External Ids for piR-48525 Gene

Summaries for piR-48525 Gene

GeneCards Summary for piR-48525 Gene

piR-48525 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48525 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48525 Gene

Genomics for piR-48525 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-48525 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J027242 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.0 -963 5 BRCA1 ARHGAP35 CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 KDM1A CTCF STK38L piR-48525 MED21 ENSG00000247903 TM7SF3 C12orf71 RF00017-1116 ARNTL2
GH12J027237 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +5.5 5475 2.1 SP1 RFX1 STAT3 PRDM1 IKZF2 POLR2A FOXJ2 EED HMBOX1 RELB ENSG00000247903 STK38L ITPR2 MN309455 piR-48525 C12orf71
GH12J027238 Enhancer 0.6 ENCODE 0.4 +7.3 7275 0.2 ZNF629 JUND EED ZNF580 FOSL1 ZFHX2 JUNB ZSCAN23 ATF3 ZNF24 TM7SF3 STK38L MN309455 piR-48525 C12orf71
GH12J027236 Enhancer 0.6 ENCODE dbSUPER 0.4 +6.9 6908 0.2 EED FOSL1 POLR2A MED21 STK38L MN309455 piR-48525 C12orf71
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48525 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-48525 Gene

Genomic Locations for piR-48525 Gene
chr12:27,243,913-27,243,938
(GRCh38/hg38)
Size:
26 bases
Orientation:
Minus strand

Genomic View for piR-48525 Gene

Genes around piR-48525 on UCSC Golden Path with GeneCards custom track
piR-48525 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-48525 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48525 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48525 Gene

Proteins for piR-48525 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-48525 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48525 Gene

Domains & Families for piR-48525 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48525 Gene

Function for piR-48525 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-48525 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48525 Gene

Localization for piR-48525 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48525 Gene

Pathways & Interactions for piR-48525 Gene

PathCards logo

SuperPathways for piR-48525 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48525 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-48525 Gene

Drugs & Compounds for piR-48525 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-48525 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-48525 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004FB82A_9606 piRNA 26 1

ENA: DQ580413.1:1..26:ncRNA,

piR-48525 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48525 Gene

No ASD Table

Relevant External Links for piR-48525 Gene

GeneLoc Exon Structure for
piR-48525

No data available for mRNA/cDNA for piR-48525 Gene

Expression for piR-48525 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48525 Gene

Orthologs for piR-48525 Gene

No data available for Orthologs and Evolution for piR-48525 Gene

Paralogs for piR-48525 Gene

No data available for Paralogs for piR-48525 Gene

Variants for piR-48525 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48525 Gene

Disorders for piR-48525 Gene

No disorders were found for piR-48525 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48525 Gene

Publications for piR-48525 Gene

No publications were found for piR-48525 Gene.

No data available for Mastermind for piR-48525 Gene

Products for piR-48525 Gene

Sources for piR-48525 Gene