Aliases for piR-48409 Gene

Data sources for piR-48409 Gene:

Subcategory (RNA class) for piR-48409 Gene

piRNA

Aliases for piR-48409 Gene

  • PiR-48409 (ENA)

No data available for External Ids for piR-48409 Gene

Summaries for piR-48409 Gene

GeneCards Summary for piR-48409 Gene

piR-48409 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48409 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48409 Gene

Genomics for piR-48409 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-48409 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J130903 Enhancer 0.3 dbSUPER 250.7 +1.8 1842 1.1 CTCF RAD21 lnc-ADAMTS8-5 piR-48409 ENSG00000255455 LINC02551 ADAMTS8 SNX19 piR-43328 ADAMTS15
GH11J130907 Enhancer 0.3 dbSUPER 250.7 -1.2 -1231 0.5 MNT lnc-ADAMTS8-5 piR-48409 SNX19 ADAMTS8 ENSG00000255455 LINC02551 piR-44546-001 ADAMTS15
GH11J130908 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.7 -3.4 -3350 2.6 JUND CEBPB FOS SNX19 ENSG00000255455 LINC02551 ADAMTS8 piR-48409 piR-44546-001 HSALNG0088255 ADAMTS15
GH11J130911 Enhancer 0.5 dbSUPER 0.4 -6.9 -6855 2.2 IKZF1 ZNF316 NFE2 SCRT1 MAFG POLR2A NFE2L2 EMSY SNX19 ENSG00000255455 LINC02551 ADAMTS8 HSALNG0088255 piR-44546-001 piR-48409 ADAMTS15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48409 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-48409 Gene

Latest Assembly
chr11:130,906,098-130,906,128
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-48409 Gene

Genes around piR-48409 on UCSC Golden Path with GeneCards custom track
piR-48409 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-48409 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48409 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48409 Gene

Proteins for piR-48409 Gene

Post-translational modifications for piR-48409 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48409 Gene

Domains & Families for piR-48409 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48409 Gene

Function for piR-48409 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48409 Gene

Localization for piR-48409 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48409 Gene

Pathways & Interactions for piR-48409 Gene

PathCards logo

SuperPathways for piR-48409 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48409 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-48409 Gene

Drugs & Compounds for piR-48409 Gene

No Compound Related Data Available

Transcripts for piR-48409 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-48409 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001A514A_9606 piRNA 31 1

ENA: DQ580297.1:1..31:ncRNA,

piR-48409 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48409 Gene

No ASD Table

Relevant External Links for piR-48409 Gene

GeneLoc Exon Structure for
piR-48409

No data available for mRNA/cDNA for piR-48409 Gene

Expression for piR-48409 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48409 Gene

Orthologs for piR-48409 Gene

No data available for Orthologs and Evolution for piR-48409 Gene

Paralogs for piR-48409 Gene

No data available for Paralogs for piR-48409 Gene

Variants for piR-48409 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48409 Gene

Disorders for piR-48409 Gene

No disorders were found for piR-48409 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48409 Gene

Publications for piR-48409 Gene

No publications were found for piR-48409 Gene.

No data available for Mastermind for piR-48409 Gene

Products for piR-48409 Gene

Sources for piR-48409 Gene