Aliases for piR-48259 Gene

Subcategory (RNA class) for piR-48259 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-48259 Gene

  • PiR-48259 161

No data available for External Ids for piR-48259 Gene

Summaries for piR-48259 Gene

GeneCards Summary for piR-48259 Gene

piR-48259 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48259 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48259 Gene

Genomics for piR-48259 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-48259 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J079420 Enhancer 0.6 ENCODE 600.7 -1.9 -1856 0.1 ATF7 ZNF444 ZBTB11 GABPA ATF2 NCOA1 ZBTB40 GABPB1 RLF CTBP1 ENSG00000279637 lnc-ATP9B-1 piR-48259 NFATC1 lnc-PQLC1-16 CTDP1
GH18J079421 Enhancer 0.5 Ensembl 600.7 +0.2 159 1 RUNX3 JUNB MYC ZBED1 CREM ENSG00000279637 lnc-ATP9B-1 piR-48259 NFATC1 SLC66A2 ADNP2 ENSG00000286186 CTDP1
GH18J079423 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 0.7 +2.1 2059 2 ARHGAP35 ZNF248 NR2F2 NFIC POLR2A ZNF366 HLTF RXRA ZNF48 RBFADN ENSG00000267127 NFATC1 SLC66A2 piR-48259 ENSG00000286186 CTDP1
GH18J079457 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +37.5 37471 3.6 POLR2A RELA IKZF2 ZNF600 PKNOX1 SIN3A DPF2 RELB CEBPB RUNX3 NFATC1 RBFADN CTDP1 ENSG00000286186 LOC101927897 piR-48259
GH18J079436 Enhancer 0.9 ENCODE dbSUPER 0.4 +14.0 13954 0.2 SP1 STAT3 RELA IKZF2 RCOR1 TRIM22 PKNOX1 EED SIN3A ARID3A NFATC1 piR-48259 ENSG00000286186 CTDP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48259 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-48259 Gene

Genomic Locations for piR-48259 Gene
chr18:79,422,142-79,422,171
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-48259 Gene

Genes around piR-48259 on UCSC Golden Path with GeneCards custom track
piR-48259 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-48259 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48259 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48259 Gene

Proteins for piR-48259 Gene

Post-translational modifications for piR-48259 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48259 Gene

Domains & Families for piR-48259 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48259 Gene

Function for piR-48259 Gene

Phenotypes From GWAS Catalog for piR-48259 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48259 Gene

Localization for piR-48259 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48259 Gene

Pathways & Interactions for piR-48259 Gene

PathCards logo

SuperPathways for piR-48259 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48259 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-48259 Gene

Drugs & Compounds for piR-48259 Gene

No Compound Related Data Available

Transcripts for piR-48259 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-48259 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005C5A98_9606 piRNA 30 1

ENA: DQ580147.1:1..30:ncRNA,

piR-48259 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48259 Gene

No ASD Table

Relevant External Links for piR-48259 Gene

GeneLoc Exon Structure for
piR-48259

No data available for mRNA/cDNA for piR-48259 Gene

Expression for piR-48259 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48259 Gene

Orthologs for piR-48259 Gene

No data available for Orthologs and Evolution for piR-48259 Gene

Paralogs for piR-48259 Gene

No data available for Paralogs for piR-48259 Gene

Variants for piR-48259 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48259 Gene

Disorders for piR-48259 Gene

No disorders were found for piR-48259 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48259 Gene

Publications for piR-48259 Gene

No publications were found for piR-48259 Gene.

No data available for Mastermind for piR-48259 Gene

Products for piR-48259 Gene

Sources for piR-48259 Gene