piR-48259 Gene (RNA Gene)

 

GC18P079423
GIFtS:
3

Aliases for piR-48259 Gene

Subcategory (RNA class) for piR-48259 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for piR-48259 Gene

  • PiR-48259 166

No data available for External Ids for piR-48259 Gene

Summaries for piR-48259 Gene

GeneCards Summary for piR-48259 Gene

piR-48259 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-48259 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-48259 Gene

Genomics for piR-48259 Gene

GeneHancer (GH) Regulatory Elements for piR-48259 Gene

Promoters and enhancers for piR-48259 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J079420 Enhancer 0.5 ENCODE 750.6 -1.9 -1856 0.1 ZBTB40 CTBP1 TRIM24 KLF14 ATF7 GABPA ZBTB11 NCOA1 ATF2 ENSG00000279637 lnc-ATP9B-1 piR-48259 NFATC1 lnc-PQLC1-16
GH18J079421 Enhancer 0.5 Ensembl 750.6 +0.2 159 1 MYC CREM ZBED1 RUNX3 JUNB ENSG00000279637 lnc-ATP9B-1 piR-48259 NFATC1 SLC66A2 ADNP2 ENSG00000286186
GH18J079423 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 0.6 +2.1 2059 2 RXRA ZNF248 POLR2A NR2F2 NFIC ZNF366 HLTF ZNF48 RBFADN ENSG00000267127 NFATC1 SLC66A2 piR-48259 ENSG00000286186
GH18J079457 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +37.5 37471 3.6 RELA POLR2A ZNF687 IKZF2 PKNOX1 JUND DPF2 RUNX3 IKZF1 HDGF NFATC1 RBFADN CTDP1 ENSG00000286186 LOC101927897 piR-48259
GH18J079436 Enhancer 0.9 ENCODE dbSUPER 0.4 +14.0 13954 0.2 SP1 ETV6 RELA MLLT1 ZNF687 CREM ZBED1 ZBTB33 IKZF1 TRIM22 NFATC1 piR-48259 ENSG00000286186
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-48259 on UCSC Golden Path with GeneCards custom track

Genomic Locations for piR-48259 Gene

Genomic Locations for piR-48259 Gene
chr18:79,422,142-79,422,171
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-48259 Gene

Genes around piR-48259 on UCSC Golden Path with GeneCards custom track

piR-48259 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-48259 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-48259 Gene

Proteins for piR-48259 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-48259 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-48259 Gene

Domains & Families for piR-48259 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-48259 Gene

Function for piR-48259 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-48259 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-48259 Gene

Localization for piR-48259 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-48259 Gene

Pathways & Interactions for piR-48259 Gene

PathCards logo

SuperPathways for piR-48259 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-48259 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for piR-48259 Gene

Drugs & Compounds for piR-48259 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-48259 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for piR-48259 Gene

(1) RNACentral transcripts :
(1) ENA transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for piR-48259 Gene

No ASD Table

Relevant External Links for piR-48259 Gene

GeneLoc Exon Structure for
piR-48259

Expression for piR-48259 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-48259 Gene

Orthologs for piR-48259 Gene

No data available for Orthologs and Evolution for piR-48259 Gene

Paralogs for piR-48259 Gene

No data available for Paralogs for piR-48259 Gene

Variants for piR-48259 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-48259 Gene

Disorders for piR-48259 Gene

No disorders were found for piR-48259 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-48259 Gene

Publications for piR-48259 Gene

No publications were found for piR-48259 Gene.

No data available for External Links for piR-48259 Gene

Products for piR-48259 Gene

Sources for piR-48259 Gene