piR-47858 Gene (RNA Gene)

 

GC01M181536
GIFtS:
2
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Aliases for piR-47858 Gene

Subcategory (RNA class) for piR-47858 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-47858 Gene

Previous GeneCards Identifiers for piR-47858 Gene

  • GC01M181242
  • GC01M181385

No data available for External Ids for piR-47858 Gene

Summaries for piR-47858 Gene

GeneCards Summary for piR-47858 Gene

piR-47858 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-47858 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-47858 Gene

Genomics for piR-47858 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-47858 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J179586 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 +0.9 854 1 CTCF ZNF692 TARDBP FOXA1 ZIC2 PATZ1 EZH2 ZFX ZBTB20 MTA3 ENSG00000227141 LOC126860 piR-36277 piR-30907 piR-36656 piR-36681 piR-38618 piR-33898 piR-34124 piR-31766
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-47858 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-47858 Gene

Genomic Locations for piR-47858 Gene
chr1:179,587,149-179,587,179
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-47858 Gene

Genes around piR-47858 on UCSC Golden Path with GeneCards custom track
piR-47858 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-47858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-47858 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-47858 Gene

Proteins for piR-47858 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-47858 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-47858 Gene

Domains & Families for piR-47858 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-47858 Gene

Function for piR-47858 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-47858 Gene

Localization for piR-47858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-47858 Gene

Pathways & Interactions for piR-47858 Gene

PathCards logo

SuperPathways for piR-47858 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-47858 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-47858 Gene

Drugs & Compounds for piR-47858 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-47858 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-47858 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000376801_9606 piRNA 31 1

ENA: DQ579747.1:1..31:ncRNA,

URS00005B2784_9606 piRNA 30 1

ENA: DQ579746.1:1..30:ncRNA,

piR-47858 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-47858 Gene

No ASD Table

Relevant External Links for piR-47858 Gene

GeneLoc Exon Structure for
piR-47858

No data available for mRNA/cDNA for piR-47858 Gene

Expression for piR-47858 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-47858 Gene

Orthologs for piR-47858 Gene

No data available for Orthologs and Evolution for piR-47858 Gene

Paralogs for piR-47858 Gene

No data available for Paralogs for piR-47858 Gene

Variants for piR-47858 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-47858 Gene

Disorders for piR-47858 Gene

No disorders were found for piR-47858 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-47858 Gene

Publications for piR-47858 Gene

No publications were found for piR-47858 Gene.

No data available for Mastermind for piR-47858 Gene

Products for piR-47858 Gene

Sources for piR-47858 Gene