piR-43680-002 Gene (RNA Gene)

 

GC09P115427
GIFtS:
2
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Aliases for piR-43680-002 Gene

Data sources for piR-43680-002 Gene:

Subcategory (RNA class) for piR-43680-002 Gene

piRNA

Aliases for piR-43680-002 Gene

  • PiR-43680 (ENA)
  • PiR-60560 (ENA)
  • PiR-43681 (ENA)

Previous GeneCards Identifiers for piR-43680-002 Gene

  • GC09P114558
  • GC09P114757
  • GC09P115108

No data available for External Ids for piR-43680-002 Gene

Summaries for piR-43680-002 Gene

GeneCards Summary for piR-43680-002 Gene

piR-43680-002 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-43680-002 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-43680-002 Gene

Genomics for piR-43680-002 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-43680-002 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J113113 Promoter 1 EPDnew Ensembl 250.7 -1.6 -1631 1.2 CTCF RAD21 NFIB FOS TRIM22 NFIC FAM225A piR-30533-002 piR-33205-002 piR-33220-002 piR-36459-002 piR-31404-002 piR-33850-002 piR-43680-002 piR-44506-002 piR-44597
GH09J113116 Enhancer 0.2 Ensembl 250.7 +1.9 1869 1.8 piR-30533-002 piR-30548-002 piR-30700-002 piR-30741-002 piR-30746-002 piR-32880-002 piR-33112-002 piR-33126-002 piR-33205-002 piR-33220-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-43680-002 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-43680-002 Gene

Latest Assembly
chr9:113,114,832-113,114,862
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for piR-43680-002 Gene

Genes around piR-43680-002 on UCSC Golden Path with GeneCards custom track
piR-43680-002 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-43680-002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-43680-002 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-43680-002 Gene

Proteins for piR-43680-002 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for piR-43680-002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-43680-002 Gene

Domains & Families for piR-43680-002 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-43680-002 Gene

Function for piR-43680-002 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-43680-002 Gene

Localization for piR-43680-002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-43680-002 Gene

Pathways & Interactions for piR-43680-002 Gene

PathCards logo

SuperPathways for piR-43680-002 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-43680-002 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-43680-002 Gene

Drugs & Compounds for piR-43680-002 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for piR-43680-002 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-43680-002 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DAEFE_9606 piRNA 30 1

ENA: DQ575568.1:1..30:ncRNA,

URS00003014EA_9606 piRNA 29 1

ENA: DQ575569.1:1..30:ncRNA,

URS00003CCB5D_9606 piRNA 29 1

ENA: DQ594448.1:1..29:ncRNA,

piR-43680-002 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-43680-002 Gene

No ASD Table

Relevant External Links for piR-43680-002 Gene

GeneLoc Exon Structure for
piR-43680-002

No data available for mRNA/cDNA for piR-43680-002 Gene

Expression for piR-43680-002 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-43680-002 Gene

Orthologs for piR-43680-002 Gene

No data available for Orthologs and Evolution for piR-43680-002 Gene

Paralogs for piR-43680-002 Gene

No data available for Paralogs for piR-43680-002 Gene

Variants for piR-43680-002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-43680-002 Gene

Disorders for piR-43680-002 Gene

No disorders were found for piR-43680-002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-43680-002 Gene

Publications for piR-43680-002 Gene

No publications were found for piR-43680-002 Gene.

No data available for Mastermind for piR-43680-002 Gene

Products for piR-43680-002 Gene

Sources for piR-43680-002 Gene