piR-43518 Gene (RNA Gene)

 

GC17M032610
GIFtS:
2

Aliases for piR-43518 Gene

Subcategory (RNA class) for piR-43518 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for piR-43518 Gene

  • PiR-43518 166

No data available for External Ids for piR-43518 Gene

Summaries for piR-43518 Gene

GeneCards Summary for piR-43518 Gene

piR-43518 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-43518 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-43518 Gene

Genomics for piR-43518 Gene

GeneHancer (GH) Regulatory Elements for piR-43518 Gene

Promoters and enhancers for piR-43518 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J032609 Enhancer 0.8 Ensembl ENCODE 750.6 +0.1 126 1 CTCF ETV6 RAD21 MLLT1 ZNF687 IKZF1 TRIM22 IKZF2 ZNF143 CBFB piR-43518 lnc-C17orf75-9 MYO1D
GH17J032610 Enhancer 0.3 Ensembl 750.6 -1.0 -974 0.8 EZH2 piR-43518 ENSG00000264458 MYO1D
GH17J032626 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -17.9 -17920 1.3 CTCF FOXA1 RAD21 SP1 MAFK RFX1 RXRA FOXA2 POLR2A USF1 ENSG00000264458 CDK5R1 MYO1D piR-43518
GH17J032621 Enhancer 0.8 Ensembl ENCODE 0.4 -12.8 -12848 2.1 CTCF MLLT1 SP7 POLR2A ZBTB17 USF1 PRDM4 HNF4A ZNF664 SIN3A CDK5R1 ENSG00000264458 piR-43518 MYO1D
GH17J032627 Promoter 0.5 Ensembl 0.4 -17.0 -16974 0.4 MAFK POLR2A ENSG00000264458 CDK5R1 piR-43518 MYO1D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-43518 on UCSC Golden Path with GeneCards custom track

Genomic Locations for piR-43518 Gene

Genomic Locations for piR-43518 Gene
chr17:32,609,398-32,609,427
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-43518 Gene

Genes around piR-43518 on UCSC Golden Path with GeneCards custom track

piR-43518 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-43518 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-43518 Gene

Proteins for piR-43518 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-43518 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-43518 Gene

Domains & Families for piR-43518 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-43518 Gene

Function for piR-43518 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-43518 Gene

Localization for piR-43518 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-43518 Gene

Pathways & Interactions for piR-43518 Gene

PathCards logo

SuperPathways for piR-43518 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-43518 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for piR-43518 Gene

Drugs & Compounds for piR-43518 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-43518 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for piR-43518 Gene

(1) RNACentral transcripts :
(1) ENA transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for piR-43518 Gene

No ASD Table

Relevant External Links for piR-43518 Gene

GeneLoc Exon Structure for
piR-43518

Expression for piR-43518 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-43518 Gene

Orthologs for piR-43518 Gene

No data available for Orthologs and Evolution for piR-43518 Gene

Paralogs for piR-43518 Gene

No data available for Paralogs for piR-43518 Gene

Variants for piR-43518 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-43518 Gene

Disorders for piR-43518 Gene

No disorders were found for piR-43518 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-43518 Gene

Publications for piR-43518 Gene

No publications were found for piR-43518 Gene.

No data available for External Links for piR-43518 Gene

Products for piR-43518 Gene

Sources for piR-43518 Gene