Aliases for piR-42797 Gene

Subcategory (RNA class) for piR-42797 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-42797 Gene

  • PiR-42797 161

No data available for External Ids for piR-42797 Gene

Summaries for piR-42797 Gene

GeneCards Summary for piR-42797 Gene

piR-42797 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-42797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-42797 Gene

Genomics for piR-42797 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-42797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212104 Enhancer 0.9 Ensembl ENCODE 0.7 +3.3 3332 7.4 ARHGAP35 ZIC2 REST NR2C1 ZNF24 SOX6 CTCF POLR2A ZNF316 NR2C2 INTS7 piR-42797 piR-31292-010 DTL PPP2R5A
GH01J212118 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +14.8 14840 2 PBX2 ZNF600 SOX6 FOXJ2 EP300 SCRT2 ZXDB ZEB1 ZBTB48 ZBTB17 INTS7 PPP2R5A piR-31292-010 piR-42797
GH01J212119 Enhancer 0.7 Ensembl 0.4 +13.7 13726 0.2 SOX6 FOXJ2 EP300 ZBTB17 CEBPG NR2F1 TAL1 NR2F6 DPF2 ADNP piR-31292-010 piR-42797 INTS7 PPP2R5A
GH01J212121 Enhancer 0.6 Ensembl 0.4 +17.4 17426 0.8 HDAC1 ZNF766 HMBOX1 NR2C2 MYC FOSL1 NR2F1 NR2F6 BHLHE40 VEZF1 NSL1 piR-31292-010 piR-42797 INTS7 PPP2R5A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-42797 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-42797 Gene

Genomic Locations for piR-42797 Gene
chr1:212,104,375-212,104,405
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for piR-42797 Gene

Genes around piR-42797 on UCSC Golden Path with GeneCards custom track
piR-42797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-42797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-42797 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-42797 Gene

Proteins for piR-42797 Gene

Post-translational modifications for piR-42797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-42797 Gene

Domains & Families for piR-42797 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-42797 Gene

Function for piR-42797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-42797 Gene

Localization for piR-42797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-42797 Gene

Pathways & Interactions for piR-42797 Gene

PathCards logo

SuperPathways for piR-42797 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-42797 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-42797 Gene

Drugs & Compounds for piR-42797 Gene

No Compound Related Data Available

Transcripts for piR-42797 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-42797 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000458022_9606 piRNA 31 1

ENA: DQ574685.1:1..31:ncRNA,

piR-42797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-42797 Gene

No ASD Table

Relevant External Links for piR-42797 Gene

GeneLoc Exon Structure for
piR-42797

No data available for mRNA/cDNA for piR-42797 Gene

Expression for piR-42797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-42797 Gene

Orthologs for piR-42797 Gene

No data available for Orthologs and Evolution for piR-42797 Gene

Paralogs for piR-42797 Gene

No data available for Paralogs for piR-42797 Gene

Variants for piR-42797 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-42797 Gene

Disorders for piR-42797 Gene

No disorders were found for piR-42797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-42797 Gene

Publications for piR-42797 Gene

No publications were found for piR-42797 Gene.

No data available for Mastermind for piR-42797 Gene

Products for piR-42797 Gene

Sources for piR-42797 Gene