piR-42656 Gene (RNA Gene)

 

GC19M049851
GIFtS:
2
See more...

Aliases for piR-42656 Gene

Subcategory (RNA class) for piR-42656 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-42656 Gene

  • PiR-42656 161

No data available for External Ids for piR-42656 Gene

Summaries for piR-42656 Gene

GeneCards Summary for piR-42656 Gene

piR-42656 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-42656 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-42656 Gene

Genomics for piR-42656 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-42656 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J049849 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.2 -1233 4.1 ZNF221 BRCA1 SP1 CREB1 GATAD2A HNRNPL ZNF629 PRDM10 TFE3 SIX5 PTOV1 PTOV1-AS1 piR-32464 piR-42656 PRR12 IRF3 SNRNP70 PIH1D1 SNORD35A CPT1C
GH19J049848 Enhancer 0.9 ENCODE 600.7 +1.6 1620 0.9 RNF2 PRDM10 LEF1 IKZF1 JUND PRDM1 PATZ1 REST DPF2 RBAK PTOV1 piR-42656 PRR12 SNRNP70 FUZ MED25 ADM5 CPT1C PRMT1 PIH1D1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-42656 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-42656 Gene

Genomic Locations for piR-42656 Gene
chr19:49,850,103-49,850,132
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand

Genomic View for piR-42656 Gene

Genes around piR-42656 on UCSC Golden Path with GeneCards custom track
piR-42656 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-42656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-42656 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-42656 Gene

Proteins for piR-42656 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-42656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-42656 Gene

Domains & Families for piR-42656 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-42656 Gene

Function for piR-42656 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-42656 Gene

Localization for piR-42656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-42656 Gene

Pathways & Interactions for piR-42656 Gene

PathCards logo

SuperPathways for piR-42656 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-42656 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-42656 Gene

Drugs & Compounds for piR-42656 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-42656 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-42656 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005E46BF_9606 piRNA 30 1

ENA: DQ574544.1:1..30:ncRNA,

piR-42656 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-42656 Gene

No ASD Table

Relevant External Links for piR-42656 Gene

GeneLoc Exon Structure for
piR-42656

No data available for mRNA/cDNA for piR-42656 Gene

Expression for piR-42656 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-42656 Gene

Orthologs for piR-42656 Gene

No data available for Orthologs and Evolution for piR-42656 Gene

Paralogs for piR-42656 Gene

No data available for Paralogs for piR-42656 Gene

Variants for piR-42656 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-42656 Gene

Disorders for piR-42656 Gene

No disorders were found for piR-42656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-42656 Gene

Publications for piR-42656 Gene

No publications were found for piR-42656 Gene.

No data available for Mastermind for piR-42656 Gene

Products for piR-42656 Gene

Sources for piR-42656 Gene