piR-40844-001 Gene (RNA Gene)

 

GC10M046021
GIFtS:
4
See more...

Aliases for piR-40844-001 Gene

Subcategory (RNA class) for piR-40844-001 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-40844-001 Gene

  • PiR-40844 161

Previous GeneCards Identifiers for piR-40844-001 Gene

  • GC10M046012
  • GC10M046016

No data available for External Ids for piR-40844-001 Gene

Summaries for piR-40844-001 Gene

GeneCards Summary for piR-40844-001 Gene

piR-40844-001 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-40844-001 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-40844-001 Gene

Genomics for piR-40844-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-40844-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J046008 Enhancer 0.6 Ensembl dbSUPER 600.7 +1.0 1035 2 RBFOX2 POLR2A ZNF133 MN309082 RF00994-124 lnc-MSMB-3 piR-40844-001 piR-46542 piR-58077 piR-51497 AGAP4 MSMB NCOA4
GH10J046017 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -10.8 -10800 8.4 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 RFX1 LEF1 SOX13 NCOA4 AGAP4 AGAP7P MSMB PARGP1 ENSG00000229227 piR-40844-001 TIMM23
GH10J046028 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -19.4 -19376 4.8 BRCA1 ARHGAP35 HNRNPL CREB1 GATAD2A CTCF REST ZNF629 TFE3 ZNF512 LOC105378287 NCOA4 lnc-TIMM23-2 MARCHF8 AGAP4 AGAP7P piR-40844-001 TIMM23
GH10J046014 Enhancer 0.8 Ensembl dbSUPER 0.7 -4.1 -4064 0.2 RBFOX2 SP1 FOXA2 ATF3 YY1 GABPA ZBTB33 RBM22 JUND HNF4A MSMB piR-40844-001 NCOA4 TIMM23
GH10J046012 Enhancer 0.4 dbSUPER 0.7 -2.1 -2055 0.9 RBFOX2 RBM22 PML AGAP7P AGAP4 MSMB TIMM23 MN309082 piR-40844-001 NCOA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-40844-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-40844-001 Gene

Genomic Locations for piR-40844-001 Gene
chr10:46,011,011-46,011,036
(GRCh38/hg38)
Size:
26 bases
Orientation:
Minus strand

Genomic View for piR-40844-001 Gene

Genes around piR-40844-001 on UCSC Golden Path with GeneCards custom track
piR-40844-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-40844-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-40844-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-40844-001 Gene

Proteins for piR-40844-001 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-40844-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-40844-001 Gene

Domains & Families for piR-40844-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-40844-001 Gene

Function for piR-40844-001 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-40844-001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-40844-001 Gene

Localization for piR-40844-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-40844-001 Gene

Pathways & Interactions for piR-40844-001 Gene

PathCards logo

SuperPathways for piR-40844-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-40844-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-40844-001 Gene

Drugs & Compounds for piR-40844-001 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-40844-001 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-40844-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000486D95_9606 piRNA 26 1

ENA: DQ572732.1:1..26:ncRNA,

piR-40844-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-40844-001 Gene

No ASD Table

Relevant External Links for piR-40844-001 Gene

GeneLoc Exon Structure for
piR-40844-001

No data available for mRNA/cDNA for piR-40844-001 Gene

Expression for piR-40844-001 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-40844-001 Gene

Orthologs for piR-40844-001 Gene

No data available for Orthologs and Evolution for piR-40844-001 Gene

Paralogs for piR-40844-001 Gene

No data available for Paralogs for piR-40844-001 Gene

Variants for piR-40844-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-40844-001 Gene

Disorders for piR-40844-001 Gene

No disorders were found for piR-40844-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-40844-001 Gene

Publications for piR-40844-001 Gene

No publications were found for piR-40844-001 Gene.

No data available for Mastermind for piR-40844-001 Gene

Products for piR-40844-001 Gene

Sources for piR-40844-001 Gene