Aliases for piR-39907 Gene

Data sources for piR-39907 Gene:

RNA type for piR-39907 Gene

piRNA

Aliases for piR-39907 Gene

  • PiR-39907 (ENA)
  • PiR-39908 (ENA)

Previous GeneCards Identifiers for piR-39907 Gene

  • GC05P042997
  • GC05P043022
  • GC05P043050
  • GC05P043321

No data available for External Ids for piR-39907 Gene

Summaries for piR-39907 Gene

GeneCards Summary for piR-39907 Gene

piR-39907 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39907 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39907 Gene

Genomics for piR-39907 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J042987 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 250.7 -1.9 -1855 8.9 BCLAF1 SP1 ZNF207 ZNF654 ZNF600 MYC IKZF1 SSRP1 JUND ZNF580 FLJ32255 ENSG00000286656 ENSG00000287263 LOC105374746 MN298176 piR-39907 piR-37429 ZNF131 ENSG00000249492 ENSG00000272382
GH05J042999 Enhancer 0.9 ENCODE dbSUPER 0.4 +6.8 6750 1.1 ZNF600 SP2 GABPB1 ZNF205 ZBTB48 ZFP37 CTCF POLR2A NRF1 ZNF48 ZNF131 NIM1K ENSG00000286656 ENSG00000271788 piR-39907 LOC105374746 ANXA2R SELENOP
GH05J043004 Enhancer 0.3 Ensembl 0.4 +11.4 11434 1 ZBTB33 LOC153684 ANXA2R ZNF131 NIM1K ENSG00000271788 piR-39907 SELENOP
GH05J043000 Enhancer 0.2 FANTOM5 0.4 +5.7 5731 0.4 ZNF131 AMD1P3 ENSG00000286656 ENSG00000271788 piR-39907 LOC105374746 ANXA2R SELENOP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39907 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39907 Gene

Latest Assembly
chr5:42,993,867-42,993,897
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for piR-39907 Gene

Genes around piR-39907 on UCSC Golden Path with GeneCards custom track
piR-39907 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

piR-39907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39907 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39907 Gene

Proteins for piR-39907 Gene

Post-translational modifications for piR-39907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39907 Gene

Domains & Families for piR-39907 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39907 Gene

Function for piR-39907 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39907 Gene

Localization for piR-39907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39907 Gene

Pathways & Interactions for piR-39907 Gene

PathCards logo

SuperPathways for piR-39907 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39907 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39907 Gene

Drugs & Compounds for piR-39907 Gene

No Compound Related Data Available

Transcripts for piR-39907 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39907 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000030855C_9606 piRNA 31 1

ENA: DQ601842.1:1..31:ncRNA,

URS00003B9522_9606 piRNA 30 1

ENA: DQ601841.1:1..30:ncRNA,

piR-39907 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39907 Gene

No ASD Table

Relevant External Links for piR-39907 Gene

GeneLoc Exon Structure for
piR-39907

No data available for mRNA/cDNA for piR-39907 Gene

Expression for piR-39907 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39907 Gene

Orthologs for piR-39907 Gene

No data available for Orthologs and Evolution for piR-39907 Gene

Paralogs for piR-39907 Gene

No data available for Paralogs for piR-39907 Gene

Variants for piR-39907 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39907 Gene

Disorders for piR-39907 Gene

No disorders were found for piR-39907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39907 Gene

Publications for piR-39907 Gene

No publications were found for piR-39907 Gene.

No data available for Mastermind for piR-39907 Gene

Products for piR-39907 Gene

Sources for piR-39907 Gene