Aliases for piR-39701-009 Gene

Subcategory (RNA class) for piR-39701-009 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39701-009 Gene

  • PiR-39701 161

No data available for External Ids for piR-39701-009 Gene

Summaries for piR-39701-009 Gene

GeneCards Summary for piR-39701-009 Gene

piR-39701-009 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39701-009 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39701-009 Gene

Genomics for piR-39701-009 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39701-009 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J007693 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.4 -9.5 -9524 2.6 NFIC SPI1 NFIB ZNF18 ZNF664 NANOG MAX SP1 POU5F1 GDF3 piR-39701-009 APOBEC1
GH12J007678 Enhancer 0.8 ENCODE 0.4 +8.0 7973 0.2 CTCF IKZF1 DDX20 PKNOX1 MTA1 REST RAD21 DPF2 HDAC1 SOX6 MN298114-036 piR-57461-039 APOBEC1 piR-39701-009 GDF3
GH12J007677 Enhancer 0.7 ENCODE 0.4 +8.2 8245 0.3 CTCF RAD21 ZNF766 CBFB GABPA SMC3 FOSL1 ARNT MNT NR2F1 MN298114-036 piR-57461-039 APOBEC1 piR-39701-009 GDF3
GH12J007681 Enhancer 0.3 Ensembl 0.7 +3.7 3722 0.8 ZNF781 ZNF518A FAM66C GNB3 ENO2 RPL13P5 DEFB109F DSTNP2 LRRC23 RIMKLB GDF3 piR-39701-009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39701-009 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39701-009 Gene

Genomic Locations for piR-39701-009 Gene
chr12:7,685,493-7,685,523
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand

Genomic View for piR-39701-009 Gene

Genes around piR-39701-009 on UCSC Golden Path with GeneCards custom track
piR-39701-009 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39701-009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39701-009 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39701-009 Gene

Proteins for piR-39701-009 Gene

Post-translational modifications for piR-39701-009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39701-009 Gene

Domains & Families for piR-39701-009 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39701-009 Gene

Function for piR-39701-009 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39701-009 Gene

Localization for piR-39701-009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39701-009 Gene

Pathways & Interactions for piR-39701-009 Gene

PathCards logo

SuperPathways for piR-39701-009 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39701-009 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39701-009 Gene

Drugs & Compounds for piR-39701-009 Gene

No Compound Related Data Available

Transcripts for piR-39701-009 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39701-009 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F9C5F_9606 piRNA 30 1

ENA: DQ601635.1:1..30:ncRNA,

piR-39701-009 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39701-009 Gene

No ASD Table

Relevant External Links for piR-39701-009 Gene

GeneLoc Exon Structure for
piR-39701-009

No data available for mRNA/cDNA for piR-39701-009 Gene

Expression for piR-39701-009 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39701-009 Gene

Orthologs for piR-39701-009 Gene

No data available for Orthologs and Evolution for piR-39701-009 Gene

Paralogs for piR-39701-009 Gene

No data available for Paralogs for piR-39701-009 Gene

Variants for piR-39701-009 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39701-009 Gene

Disorders for piR-39701-009 Gene

No disorders were found for piR-39701-009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39701-009 Gene

Publications for piR-39701-009 Gene

No publications were found for piR-39701-009 Gene.

No data available for Mastermind for piR-39701-009 Gene

Products for piR-39701-009 Gene

Sources for piR-39701-009 Gene