piR-39663-002 Gene (RNA Gene)

 

GC09P112531
GIFtS:
3
See more...

Aliases for piR-39663-002 Gene

Subcategory (RNA class) for piR-39663-002 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39663-002 Gene

  • PiR-39663 161

Previous GeneCards Identifiers for piR-39663-002 Gene

  • GC09P112515
  • GC09P112523

No data available for External Ids for piR-39663-002 Gene

Summaries for piR-39663-002 Gene

GeneCards Summary for piR-39663-002 Gene

piR-39663-002 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39663-002 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39663-002 Gene

Genomics for piR-39663-002 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for piR-39663-002 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J112512 Enhancer 0.2 Ensembl 600.7 -1.8 -1842 0.2 piR-39663-002 KIAA1958 C9orf147 INIP
GH09J112514 Enhancer 0.2 Ensembl 600.7 +1.2 1158 0.2 piR-39663-002 piR-55654-527 piR-45504-555 piR-30091-178 piR-55657-251 piR-56022-574 piR-43099-613 piR-41399-490 piR-43408-242 piR-48301-428
GH09J112485 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -23.8 -23839 8.2 SP1 GATAD2A PRDM10 ZNF629 TFE3 RFX1 NFKBIZ ZNF692 POLR2A BACH1 C9orf147 KIAA1958 HSDL2 INIP ENSG00000226609 SNX30 piR-39663-002
GH09J112504 Enhancer 0.9 Ensembl ENCODE 0.4 -5.6 -5618 6.6 GATAD2A TFE3 RXRB SP1 CEBPA FOXK2 MNT SOX13 TCF7 FOXA1 HSDL2 KIAA1958 C9orf147 ENSG00000226609 SNX30 piR-39663-002 INIP
GH09J112495 Enhancer 1 FANTOM5 ENCODE 0.4 -17.1 -17067 1.2 GATAD2A SOX13 RCOR2 RXRB IRF2 SP1 CEBPA CEBPB ETS1 TCF7 INIP SUSD1 SNX30 PTBP3 C9orf147 KIAA1958 piR-39663-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39663-002 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39663-002 Gene

Genomic Locations for piR-39663-002 Gene
chr9:112,513,343-112,513,371
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand

Genomic View for piR-39663-002 Gene

Genes around piR-39663-002 on UCSC Golden Path with GeneCards custom track
piR-39663-002 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39663-002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39663-002 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39663-002 Gene

Proteins for piR-39663-002 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for piR-39663-002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39663-002 Gene

Domains & Families for piR-39663-002 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39663-002 Gene

Function for piR-39663-002 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for piR-39663-002 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39663-002 Gene

Localization for piR-39663-002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39663-002 Gene

Pathways & Interactions for piR-39663-002 Gene

PathCards logo

SuperPathways for piR-39663-002 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39663-002 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39663-002 Gene

Drugs & Compounds for piR-39663-002 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for piR-39663-002 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39663-002 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000019BBDB_9606 piRNA 29 1

ENA: DQ601597.1:1..29:ncRNA,

piR-39663-002 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39663-002 Gene

No ASD Table

Relevant External Links for piR-39663-002 Gene

GeneLoc Exon Structure for
piR-39663-002

No data available for mRNA/cDNA for piR-39663-002 Gene

Expression for piR-39663-002 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39663-002 Gene

Orthologs for piR-39663-002 Gene

No data available for Orthologs and Evolution for piR-39663-002 Gene

Paralogs for piR-39663-002 Gene

No data available for Paralogs for piR-39663-002 Gene

Variants for piR-39663-002 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39663-002 Gene

Disorders for piR-39663-002 Gene

No disorders were found for piR-39663-002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39663-002 Gene

Publications for piR-39663-002 Gene

No publications were found for piR-39663-002 Gene.

No data available for Mastermind for piR-39663-002 Gene

Products for piR-39663-002 Gene

Sources for piR-39663-002 Gene