Aliases for piR-39653-001 Gene

Subcategory (RNA class) for piR-39653-001 Gene

piRNA

Number of RNA Genes sources:

1 / 17

Aliases for piR-39653-001 Gene

  • PiR-39653 161

No data available for External Ids for piR-39653-001 Gene

Summaries for piR-39653-001 Gene

GeneCards Summary for piR-39653-001 Gene

piR-39653-001 is an RNA Gene, and is affiliated with the piRNA class.

Additional gene information for piR-39653-001 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for piR-39653-001 Gene

Genomics for piR-39653-001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for piR-39653-001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J174736 Enhancer 0.2 Ensembl 600.7 +0.4 439 0.4 piR-39653-001 lnc-MRPS14-5 CACYBP GPR52 RABGAP1L
GH01J174748 Enhancer 0.5 Ensembl 0.4 +12.2 12227 0.4 IKZF1 NR2C1 ZNF766 NR2F1 NR2F6 RARA TCF12 TRIM24 CBFA2T3 SERPINC1 lnc-MRPS14-5 piR-39653-001 CACYBP GPR52 RABGAP1L
GH01J174727 Enhancer 0.5 Ensembl 0.4 -9.4 -9361 0.4 CTCF RUNX3 ZNF316 MAFF CHD4 MAFK RABGAP1L-DT piR-39653-001 piR-56883-016 GPR52 CACYBP RABGAP1L
GH01J174689 Enhancer 0.7 ENCODE 0.3 -46.8 -46753 1 GATAD2A SOX13 RXRB GABPA FOXA2 KDM6A MAFG CREM FOXP1 SAP130 RABGAP1L piR-56883-016 piR-39653-001 GPR52 CACYBP
GH01J174692 Enhancer 0.6 Ensembl 0.3 -43.7 -43661 1.4 CTCF JUND SOX13 FOXA2 TEAD1 FOSL1 MIER1 SAP130 MNT PRDM4 RABGAP1L piR-39653-001 piR-56883-016 GPR52 CACYBP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around piR-39653-001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for piR-39653-001 Gene

Genomic Locations for piR-39653-001 Gene
chr1:174,736,562-174,736,591
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand

Genomic View for piR-39653-001 Gene

Genes around piR-39653-001 on UCSC Golden Path with GeneCards custom track
piR-39653-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

piR-39653-001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for piR-39653-001 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for piR-39653-001 Gene

Proteins for piR-39653-001 Gene

Post-translational modifications for piR-39653-001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for piR-39653-001 Gene

Domains & Families for piR-39653-001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for piR-39653-001 Gene

Function for piR-39653-001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for piR-39653-001 Gene

Localization for piR-39653-001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for piR-39653-001 Gene

Pathways & Interactions for piR-39653-001 Gene

PathCards logo

SuperPathways for piR-39653-001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for piR-39653-001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for piR-39653-001 Gene

Drugs & Compounds for piR-39653-001 Gene

No Compound Related Data Available

Transcripts for piR-39653-001 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for piR-39653-001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000018338_9606 piRNA 29 1

ENA: DQ601587.1:1..29:ncRNA,

piR-39653-001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for piR-39653-001 Gene

No ASD Table

Relevant External Links for piR-39653-001 Gene

GeneLoc Exon Structure for
piR-39653-001

No data available for mRNA/cDNA for piR-39653-001 Gene

Expression for piR-39653-001 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for piR-39653-001 Gene

Orthologs for piR-39653-001 Gene

No data available for Orthologs and Evolution for piR-39653-001 Gene

Paralogs for piR-39653-001 Gene

No data available for Paralogs for piR-39653-001 Gene

Variants for piR-39653-001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for piR-39653-001 Gene

Disorders for piR-39653-001 Gene

No disorders were found for piR-39653-001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for piR-39653-001 Gene

Publications for piR-39653-001 Gene

No publications were found for piR-39653-001 Gene.

No data available for Mastermind for piR-39653-001 Gene

Products for piR-39653-001 Gene

Sources for piR-39653-001 Gene